MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:1096.3 nTPM
HPA Brain:429.4 nTPM
GTEx:1096.3 nTPM
FANTOM5:4.0 Scaled Tags Per Million
Pig:534.7 nTPM
Mouse:596.9 nTPM
Allen mouse:16.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 429.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 389.9
2666 Male, age 74, left hemisphere 454.7
2411 Female, age 72, unknown 426.0
1870 Female, age 42, unknown 418.6
1827 Male, age 72, unknown 409.9
1833 Male, age 53, unknown 402.2
1830 Male, age 51, unknown 385.2
2828 Female, age 72, unknown 370.6
2219 Male, age 76, both hemispheres 350.9
2586 Male, age 75, left hemisphere 344.2
2019 Male, age 18, unknown 336.2
Dorsal raphe nucleus
nTPM: 386.8
2016 Female, age 72, unknown 431.4
2298 Female, age 72, unknown 409.8
2750 Male, age 76, both hemispheres 379.0
1828 Male, age 53, unknown 377.6
2047 Male, age 72, unknown 336.3
Inferior colliculus
nTPM: 397.6
2849 Male, age 72, unknown 409.2
2097 Female, age 72, unknown 405.5
1890 Male, age 53, unknown 389.3
1848 Female, age 42, unknown 386.3
Median raphe nucleus
nTPM: 357.5
2220 Male, age 76, midline 357.5
Periaquaductal grey, anterior
nTPM: 395.1
2502 Female, age 75, unknown 416.0
1947 Male, age 18, unknown 410.7
1795 Male, age 51, unknown 358.6
Periaquaductal grey, dorsal
nTPM: 388.2
1840 Male, age 53, unknown 446.9
1831 Male, age 72, unknown 392.8
2464 Female, age 72, unknown 373.1
2850 Male, age 76, both hemispheres 340.2
Periaquaductal grey, lateral
nTPM: 354.1
2053 Male, age 18, unknown 398.7
2140 Male, age 76, both hemispheres 336.1
2272 Male, age 74, both hemispheres 327.3
Pretectal area
nTPM: 363.1
2825 Male, age 18, unknown 419.9
1815 Male, age 53, unknown 388.6
2224 Female, age 72, unknown 377.1
1817 Female, age 42, unknown 373.2
2407 Male, age 75, both hemispheres 362.3
2316 Male, age 76, right hemisphere 362.1
2007 Male, age 72, unknown 354.5
2273 Male, age 74, both hemispheres 353.7
1816 Male, age 51, unknown 351.4
1944 Female, age 72, unknown 345.5
2667 Female, age 75, unknown 305.5
Red nucleus
nTPM: 409.5
2503 Female, age 72, unknown 500.0
1865 Male, age 51, unknown 458.3
1821 Female, age 72, unknown 450.8
2725 Female, age 75, unknown 419.3
2588 Male, age 74, left hemisphere 410.5
2584 Male, age 75, left hemisphere 408.8
2227 Male, age 72, unknown 403.7
1904 Male, age 53, unknown 401.6
2769 Male, age 72, unknown 397.6
1954 Female, age 42, unknown 373.1
2823 Male, age 76, right hemisphere 346.8
2785 Male, age 18, unknown 343.6
Substantia nigra
nTPM: 429.4
2409 Female, age 72, unknown 499.7
1851 Male, age 51, unknown 477.5
2665 Male, age 74, both hemispheres 464.4
2699 Male, age 18, unknown 459.4
2241 Male, age 72, unknown 449.6
2590 Female, age 75, unknown 435.0
1916 Female, age 42, unknown 398.4
1941 Male, age 53, unknown 376.3
1889 Female, age 72, unknown 371.4
2583 Male, age 75, right hemisphere 362.2
Superior colliculus
nTPM: 396.7
2587 Male, age 74, left hemisphere 467.0
1913 Female, age 42, unknown 431.8
2668 Female, age 75, unknown 422.9
1995 Male, age 72, unknown 410.5
1895 Male, age 76, right hemisphere 393.5
1796 Male, age 53, unknown 383.4
1839 Male, age 51, unknown 382.3
2261 Male, age 18, unknown 367.7
2664 Male, age 75, both hemispheres 366.8
2087 Female, age 72, unknown 340.8
Ventral tegmental area
nTPM: 396.6
1915 Female, age 42, unknown 450.2
2223 Female, age 72, unknown 436.2
2410 Female, age 72, unknown 395.8
2021 Male, age 53, unknown 379.5
1942 Male, age 51, unknown 370.2
2218 Male, age 76, both hemispheres 347.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 1096.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 1096.3
Samples: 139

Max nTPM: 2613.5
Min nTPM: 533.3
Std nTPM: 354.8
Median nTPM: 1038.0
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 2613.5
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 2250.0
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 2244.8
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 2069.7
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 2017.9
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 1902.3
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 1835.0
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 1784.1
GTEX-1EU9M-0011-R2b-SM-9QEH7 60-69 years, male 1692.8
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 1667.4
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 1647.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 4.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 4.0
FF:10158-103A5 76 years, female 4.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 534.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 524.4
Samples: 4

Max nTPM: 648.0
Min nTPM: 427.4
Sample A Female 648.0
Sample B Female 565.4
Sample C Male 427.4
Sample D Male 456.6
Midbrain
nTPM: 519.0
Samples: 4

Max nTPM: 736.4
Min nTPM: 389.7
Sample A Female 736.4
Sample B Female 540.1
Sample C Male 409.6
Sample D Male 389.7
Periaqueductal gray
nTPM: 417.1
Samples: 3

Max nTPM: 430.4
Min nTPM: 398.2
Sample B Female 430.4
Sample C Male 422.7
Sample D Male 398.2
Superior colliculi
nTPM: 534.7
Samples: 4

Max nTPM: 639.9
Min nTPM: 446.2
Sample A Female 590.5
Sample B Female 639.9
Sample C Male 462.3
Sample D Male 446.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 596.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 596.9
Samples: 4

Max nTPM: 630.0
Min nTPM: 560.0
Sample A Male 630.0
Sample B Male 606.9
Sample C Female 560.0
Sample D Female 590.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 16.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 16.7
68410596 Antisense, RP_041214_02_C02, Mouse strain C57BL/6J (56 days, male) 16.7

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