MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:34.8 nTPM
HPA Brain:63.7 nTPM
GTEx:34.8 nTPM
FANTOM5:98.9 Scaled Tags Per Million
Pig:15.1 nTPM
Mouse:13.7 nTPM
Allen mouse:5.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 63.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 61.3
2666 Male, age 74, left hemisphere 77.0
2586 Male, age 75, left hemisphere 75.6
2219 Male, age 76, both hemispheres 69.1
2828 Female, age 72, unknown 61.4
1830 Male, age 51, unknown 58.0
2019 Male, age 18, unknown 57.9
1827 Male, age 72, unknown 57.3
1870 Female, age 42, unknown 56.2
1833 Male, age 53, unknown 52.9
2411 Female, age 72, unknown 47.3
Dorsal raphe nucleus
nTPM: 48.6
2750 Male, age 76, both hemispheres 54.9
1828 Male, age 53, unknown 51.0
2047 Male, age 72, unknown 50.4
2016 Female, age 72, unknown 48.4
2298 Female, age 72, unknown 38.2
Inferior colliculus
nTPM: 57.1
2849 Male, age 72, unknown 69.9
1848 Female, age 42, unknown 57.3
1890 Male, age 53, unknown 55.1
2097 Female, age 72, unknown 46.2
Median raphe nucleus
nTPM: 59.9
2220 Male, age 76, midline 59.9
Periaquaductal grey, anterior
nTPM: 55.6
2502 Female, age 75, unknown 61.0
1795 Male, age 51, unknown 57.5
1947 Male, age 18, unknown 48.3
Periaquaductal grey, dorsal
nTPM: 53.2
2850 Male, age 76, both hemispheres 59.8
2464 Female, age 72, unknown 51.5
1840 Male, age 53, unknown 50.8
1831 Male, age 72, unknown 50.7
Periaquaductal grey, lateral
nTPM: 52.3
2140 Male, age 76, both hemispheres 56.2
2053 Male, age 18, unknown 50.9
2272 Male, age 74, both hemispheres 49.9
Pretectal area
nTPM: 62.7
1816 Male, age 51, unknown 77.1
1817 Female, age 42, unknown 74.8
2007 Male, age 72, unknown 71.6
1944 Female, age 72, unknown 71.1
1815 Male, age 53, unknown 68.8
2407 Male, age 75, both hemispheres 67.5
2825 Male, age 18, unknown 59.3
2667 Female, age 75, unknown 55.5
2316 Male, age 76, right hemisphere 52.3
2224 Female, age 72, unknown 49.0
2273 Male, age 74, both hemispheres 43.1
Red nucleus
nTPM: 62.3
2584 Male, age 75, left hemisphere 71.3
2588 Male, age 74, left hemisphere 69.2
2785 Male, age 18, unknown 67.6
2725 Female, age 75, unknown 67.5
2823 Male, age 76, right hemisphere 66.1
2503 Female, age 72, unknown 61.3
1904 Male, age 53, unknown 61.2
2769 Male, age 72, unknown 59.9
2227 Male, age 72, unknown 59.4
1865 Male, age 51, unknown 59.1
1954 Female, age 42, unknown 54.5
1821 Female, age 72, unknown 50.4
Substantia nigra
nTPM: 59.8
2665 Male, age 74, both hemispheres 76.3
1941 Male, age 53, unknown 66.0
2583 Male, age 75, right hemisphere 64.2
2699 Male, age 18, unknown 63.7
1916 Female, age 42, unknown 60.1
1889 Female, age 72, unknown 58.3
2590 Female, age 75, unknown 56.1
2409 Female, age 72, unknown 53.0
1851 Male, age 51, unknown 52.8
2241 Male, age 72, unknown 47.2
Superior colliculus
nTPM: 63.7
2261 Male, age 18, unknown 69.4
1796 Male, age 53, unknown 65.8
2664 Male, age 75, both hemispheres 65.6
1913 Female, age 42, unknown 65.1
2087 Female, age 72, unknown 64.7
1995 Male, age 72, unknown 63.9
2668 Female, age 75, unknown 62.3
1839 Male, age 51, unknown 61.5
2587 Male, age 74, left hemisphere 59.8
1895 Male, age 76, right hemisphere 58.6
Ventral tegmental area
nTPM: 54.3
2223 Female, age 72, unknown 63.2
2218 Male, age 76, both hemispheres 59.8
1942 Male, age 51, unknown 53.0
2410 Female, age 72, unknown 50.6
1915 Female, age 42, unknown 49.8
2021 Male, age 53, unknown 49.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 34.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 34.8
Samples: 139

Max nTPM: 55.5
Min nTPM: 20.7
Std nTPM: 7.0
Median nTPM: 33.1
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 55.5
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 52.2
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 51.3
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 49.8
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 49.4
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 49.3
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 49.3
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 47.9
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 47.6
GTEX-18464-0011-R2a-SM-731AL 50-59 years, male 47.5
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 47.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 98.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 98.9
FF:10158-103A5 76 years, female 98.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 15.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 15.1
Samples: 4

Max nTPM: 17.1
Min nTPM: 12.8
Sample A Female 12.8
Sample B Female 14.7
Sample C Male 15.6
Sample D Male 17.1
Midbrain
nTPM: 14.6
Samples: 4

Max nTPM: 15.4
Min nTPM: 14.0
Sample A Female 15.4
Sample B Female 14.0
Sample C Male 14.9
Sample D Male 14.0
Periaqueductal gray
nTPM: 13.3
Samples: 3

Max nTPM: 13.9
Min nTPM: 12.8
Sample B Female 12.8
Sample C Male 13.9
Sample D Male 13.3
Superior colliculi
nTPM: 14.8
Samples: 4

Max nTPM: 15.7
Min nTPM: 13.5
Sample A Female 13.5
Sample B Female 14.1
Sample C Male 15.7
Sample D Male 15.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 13.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 13.7
Samples: 4

Max nTPM: 16.0
Min nTPM: 12.3
Sample A Male 12.3
Sample B Male 13.3
Sample C Female 13.2
Sample D Female 16.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 5.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 5.3
583870 Antisense, RP_040831_01_C10, Mouse strain C57BL/6J (56 days, male) 5.3

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