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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
60.7
nTPM
HPA Brain:
121.9
nTPM
GTEx:
60.7
nTPM
FANTOM5:
126.7
Scaled Tags Per Million
Pig:
26.4
nTPM
Mouse:
1.3
nTPM
MIDBRAIN - Annotated protein expression
Pending normal tissue analysis
MIDBRAIN - HPA Brain RNA-seq
Max nTPM
121.9
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 81.3
2019
Male, age 18, unknown
108.4
2586
Male, age 75, left hemisphere
101.9
1830
Male, age 51, unknown
97.5
2411
Female, age 72, unknown
96.0
1833
Male, age 53, unknown
88.3
1870
Female, age 42, unknown
86.2
2828
Female, age 72, unknown
79.7
2666
Male, age 74, left hemisphere
59.6
1827
Male, age 72, unknown
48.9
2219
Male, age 76, both hemispheres
46.2
Dorsal raphe nucleus nTPM: 56.8
2750
Male, age 76, both hemispheres
119.7
2016
Female, age 72, unknown
56.1
1828
Male, age 53, unknown
52.0
2047
Male, age 72, unknown
31.4
2298
Female, age 72, unknown
24.9
Inferior colliculus nTPM: 48.7
1890
Male, age 53, unknown
56.3
1848
Female, age 42, unknown
50.5
2849
Male, age 72, unknown
44.7
2097
Female, age 72, unknown
43.3
Median raphe nucleus nTPM: 44.8
2220
Male, age 76, midline
44.8
Periaquaductal grey, anterior nTPM: 42.5
1947
Male, age 18, unknown
44.6
1795
Male, age 51, unknown
42.3
2502
Female, age 75, unknown
40.7
Periaquaductal grey, dorsal nTPM: 30.2
2464
Female, age 72, unknown
55.7
1831
Male, age 72, unknown
33.4
1840
Male, age 53, unknown
17.4
2850
Male, age 76, both hemispheres
14.2
Periaquaductal grey, lateral nTPM: 34.3
2272
Male, age 74, both hemispheres
49.7
2053
Male, age 18, unknown
35.4
2140
Male, age 76, both hemispheres
17.8
Pretectal area nTPM: 47.5
2316
Male, age 76, right hemisphere
73.5
2407
Male, age 75, both hemispheres
64.6
1815
Male, age 53, unknown
64.2
2007
Male, age 72, unknown
60.4
1817
Female, age 42, unknown
56.9
2825
Male, age 18, unknown
44.0
2273
Male, age 74, both hemispheres
42.0
2224
Female, age 72, unknown
35.6
1944
Female, age 72, unknown
28.9
1816
Male, age 51, unknown
28.7
2667
Female, age 75, unknown
24.2
Red nucleus nTPM: 121.9
2769
Male, age 72, unknown
152.4
2785
Male, age 18, unknown
147.8
2227
Male, age 72, unknown
147.6
1904
Male, age 53, unknown
141.7
2503
Female, age 72, unknown
139.3
1865
Male, age 51, unknown
124.1
2588
Male, age 74, left hemisphere
115.5
1821
Female, age 72, unknown
109.4
1954
Female, age 42, unknown
103.5
2823
Male, age 76, right hemisphere
98.6
2725
Female, age 75, unknown
97.5
2584
Male, age 75, left hemisphere
85.7
Substantia nigra nTPM: 52.5
2590
Female, age 75, unknown
81.1
2583
Male, age 75, right hemisphere
77.1
1889
Female, age 72, unknown
60.8
1851
Male, age 51, unknown
58.2
2409
Female, age 72, unknown
51.0
1941
Male, age 53, unknown
43.3
2699
Male, age 18, unknown
41.9
1916
Female, age 42, unknown
41.4
2665
Male, age 74, both hemispheres
37.7
2241
Male, age 72, unknown
32.7
Superior colliculus nTPM: 65.8
1913
Female, age 42, unknown
102.6
1995
Male, age 72, unknown
94.1
2668
Female, age 75, unknown
90.2
1839
Male, age 51, unknown
67.0
1895
Male, age 76, right hemisphere
66.7
2587
Male, age 74, left hemisphere
63.2
2664
Male, age 75, both hemispheres
54.1
1796
Male, age 53, unknown
51.2
2261
Male, age 18, unknown
37.4
2087
Female, age 72, unknown
32.1
Ventral tegmental area nTPM: 64.0
2223
Female, age 72, unknown
98.9
2410
Female, age 72, unknown
69.4
1942
Male, age 51, unknown
59.8
2021
Male, age 53, unknown
54.5
1915
Female, age 42, unknown
51.6
2218
Male, age 76, both hemispheres
49.5
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM
60.7
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 60.7
Samples: 139
Max nTPM: 307.2
Min nTPM: 13.3
Std nTPM: 41.4
Median nTPM: 51.5
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
307.2
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
248.7
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
185.9
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
171.3
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
148.3
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
145.0
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
137.6
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
135.3
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
133.5
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
125.1
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
116.9
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
112.8
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
109.6
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
105.5
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
102.9
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
102.2
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
96.9
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
92.8
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
89.0
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
88.7
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
88.5
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
87.4
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
85.0
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
83.8
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
83.7
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
81.5
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
81.4
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
77.0
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
76.0
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
74.2
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
73.3
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
72.9
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
71.6
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
71.3
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
70.8
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
70.8
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
70.7
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
70.4
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
70.1
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
69.9
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
68.7
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
68.2
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
67.9
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
67.4
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
65.9
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
64.7
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
64.5
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
63.1
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
62.9
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
61.0
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
61.0
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
60.2
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
59.6
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
58.6
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
58.2
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
57.0
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
56.4
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
56.4
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
56.3
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
55.3
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
54.7
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
54.6
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
54.5
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
54.1
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
54.0
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
53.8
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
53.4
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
52.9
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
52.9
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
51.5
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
50.5
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
50.1
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
50.1
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
49.9
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
49.9
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
49.6
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
49.6
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
48.6
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
48.0
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
48.0
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
47.9
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
47.8
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
47.2
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
46.5
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
46.2
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
42.4
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
42.3
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
42.2
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
41.9
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
41.1
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
40.8
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
40.1
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
40.0
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
40.0
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
39.8
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
39.6
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
39.1
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
38.3
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
38.1
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
37.7
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
37.7
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
37.1
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
36.5
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
36.3
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
36.0
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
35.6
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
34.6
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
33.8
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
32.2
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
31.6
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
31.5
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
31.3
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
31.2
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
30.8
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
30.0
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
29.3
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
29.2
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
28.9
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
28.5
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
28.1
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
27.3
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
26.6
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
26.5
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
26.2
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
25.6
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
24.5
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
24.5
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
24.3
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
21.8
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
21.2
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
20.0
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
19.2
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
17.4
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
17.2
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
17.0
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
16.9
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
16.0
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
13.9
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
13.3
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.