MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:212.3 nTPM
HPA Brain:109.3 nTPM
GTEx:212.3 nTPM
FANTOM5:43.3 Scaled Tags Per Million
Pig:34.7 nTPM
Mouse:22.2 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 109.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 105.7
2586 Male, age 75, left hemisphere 154.6
2828 Female, age 72, unknown 125.1
2666 Male, age 74, left hemisphere 107.3
2411 Female, age 72, unknown 107.0
1870 Female, age 42, unknown 105.8
1833 Male, age 53, unknown 96.2
2019 Male, age 18, unknown 96.0
1827 Male, age 72, unknown 94.9
1830 Male, age 51, unknown 93.6
2219 Male, age 76, both hemispheres 76.3
Dorsal raphe nucleus
nTPM: 104.0
2750 Male, age 76, both hemispheres 108.5
2016 Female, age 72, unknown 107.2
1828 Male, age 53, unknown 105.1
2298 Female, age 72, unknown 99.9
2047 Male, age 72, unknown 99.6
Inferior colliculus
nTPM: 86.9
2097 Female, age 72, unknown 89.3
1890 Male, age 53, unknown 87.8
2849 Male, age 72, unknown 86.3
1848 Female, age 42, unknown 84.3
Median raphe nucleus
nTPM: 95.8
2220 Male, age 76, midline 95.8
Periaquaductal grey, anterior
nTPM: 102.4
2502 Female, age 75, unknown 113.5
1795 Male, age 51, unknown 100.6
1947 Male, age 18, unknown 93.0
Periaquaductal grey, dorsal
nTPM: 91.8
1840 Male, age 53, unknown 98.9
2464 Female, age 72, unknown 93.2
1831 Male, age 72, unknown 90.3
2850 Male, age 76, both hemispheres 84.7
Periaquaductal grey, lateral
nTPM: 89.0
2053 Male, age 18, unknown 98.9
2140 Male, age 76, both hemispheres 92.5
2272 Male, age 74, both hemispheres 75.6
Pretectal area
nTPM: 87.2
2825 Male, age 18, unknown 102.3
1817 Female, age 42, unknown 95.2
2007 Male, age 72, unknown 92.8
1815 Male, age 53, unknown 91.3
2407 Male, age 75, both hemispheres 90.1
2667 Female, age 75, unknown 86.5
2316 Male, age 76, right hemisphere 86.1
1816 Male, age 51, unknown 84.5
2224 Female, age 72, unknown 80.4
1944 Female, age 72, unknown 75.2
2273 Male, age 74, both hemispheres 74.7
Red nucleus
nTPM: 109.3
2769 Male, age 72, unknown 120.3
1904 Male, age 53, unknown 116.0
2503 Female, age 72, unknown 115.3
1865 Male, age 51, unknown 113.9
2588 Male, age 74, left hemisphere 113.9
1954 Female, age 42, unknown 112.6
2227 Male, age 72, unknown 112.3
2584 Male, age 75, left hemisphere 111.9
1821 Female, age 72, unknown 109.5
2823 Male, age 76, right hemisphere 98.8
2785 Male, age 18, unknown 96.9
2725 Female, age 75, unknown 90.7
Substantia nigra
nTPM: 107.5
1851 Male, age 51, unknown 128.7
2665 Male, age 74, both hemispheres 127.3
2583 Male, age 75, right hemisphere 120.1
2699 Male, age 18, unknown 112.8
2590 Female, age 75, unknown 109.9
1916 Female, age 42, unknown 108.4
1941 Male, age 53, unknown 96.9
2241 Male, age 72, unknown 95.7
1889 Female, age 72, unknown 88.0
2409 Female, age 72, unknown 87.1
Superior colliculus
nTPM: 99.4
2664 Male, age 75, both hemispheres 135.8
1995 Male, age 72, unknown 105.3
1913 Female, age 42, unknown 104.3
2668 Female, age 75, unknown 103.5
1796 Male, age 53, unknown 96.1
2587 Male, age 74, left hemisphere 94.9
2261 Male, age 18, unknown 94.3
1839 Male, age 51, unknown 93.1
2087 Female, age 72, unknown 84.7
1895 Male, age 76, right hemisphere 81.9
Ventral tegmental area
nTPM: 107.8
1915 Female, age 42, unknown 120.7
2410 Female, age 72, unknown 113.9
2223 Female, age 72, unknown 111.6
2021 Male, age 53, unknown 105.9
1942 Male, age 51, unknown 104.1
2218 Male, age 76, both hemispheres 90.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 212.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 212.3
Samples: 139

Max nTPM: 593.6
Min nTPM: 94.0
Std nTPM: 75.0
Median nTPM: 193.6
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 593.6
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 485.1
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 424.9
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 382.1
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 381.2
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 371.9
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 349.1
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 338.5
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 334.7
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 331.5
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 323.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 43.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 43.3
FF:10158-103A5 76 years, female 43.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 34.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 32.4
Samples: 4

Max nTPM: 39.6
Min nTPM: 26.8
Sample A Female 39.6
Sample B Female 30.1
Sample C Male 33.2
Sample D Male 26.8
Midbrain
nTPM: 32.1
Samples: 4

Max nTPM: 43.6
Min nTPM: 27.1
Sample A Female 43.6
Sample B Female 28.2
Sample C Male 29.4
Sample D Male 27.1
Periaqueductal gray
nTPM: 28.6
Samples: 3

Max nTPM: 31.4
Min nTPM: 26.1
Sample B Female 28.4
Sample C Male 31.4
Sample D Male 26.1
Superior colliculi
nTPM: 34.7
Samples: 4

Max nTPM: 42.3
Min nTPM: 30.5
Sample A Female 42.3
Sample B Female 34.5
Sample C Male 30.5
Sample D Male 31.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 22.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 22.2
Samples: 4

Max nTPM: 25.4
Min nTPM: 20.0
Sample A Male 25.4
Sample B Male 21.0
Sample C Female 22.2
Sample D Female 20.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
68080705 Antisense, RP_040929_01_G04, Mouse strain C57BL/6J (56 days, male) 0.0

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