MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:5.1 nTPM
HPA Brain:34.5 nTPM
GTEx:5.1 nTPM
FANTOM5:15.2 Scaled Tags Per Million
Mouse:3.3 nTPM
Allen mouse:8.3 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 34.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 21.9
2219 Male, age 76, both hemispheres 41.1
1870 Female, age 42, unknown 26.7
2411 Female, age 72, unknown 26.6
1833 Male, age 53, unknown 25.8
1827 Male, age 72, unknown 23.4
1830 Male, age 51, unknown 20.4
2828 Female, age 72, unknown 16.3
2586 Male, age 75, left hemisphere 15.2
2666 Male, age 74, left hemisphere 14.7
2019 Male, age 18, unknown 8.7
Dorsal raphe nucleus
nTPM: 24.3
2298 Female, age 72, unknown 27.6
2047 Male, age 72, unknown 25.3
2016 Female, age 72, unknown 24.0
2750 Male, age 76, both hemispheres 23.5
1828 Male, age 53, unknown 21.0
Inferior colliculus
nTPM: 32.3
2849 Male, age 72, unknown 40.5
1848 Female, age 42, unknown 31.6
2097 Female, age 72, unknown 30.1
1890 Male, age 53, unknown 27.1
Median raphe nucleus
nTPM: 26.4
2220 Male, age 76, midline 26.4
Periaquaductal grey, anterior
nTPM: 34.5
2502 Female, age 75, unknown 49.1
1947 Male, age 18, unknown 33.8
1795 Male, age 51, unknown 20.7
Periaquaductal grey, dorsal
nTPM: 28.5
1840 Male, age 53, unknown 41.9
2464 Female, age 72, unknown 27.9
2850 Male, age 76, both hemispheres 24.7
1831 Male, age 72, unknown 19.6
Periaquaductal grey, lateral
nTPM: 23.7
2140 Male, age 76, both hemispheres 27.0
2053 Male, age 18, unknown 24.8
2272 Male, age 74, both hemispheres 19.3
Pretectal area
nTPM: 20.3
2224 Female, age 72, unknown 37.4
2825 Male, age 18, unknown 34.1
2667 Female, age 75, unknown 29.3
2316 Male, age 76, right hemisphere 26.7
2273 Male, age 74, both hemispheres 15.8
2407 Male, age 75, both hemispheres 15.7
1816 Male, age 51, unknown 14.8
2007 Male, age 72, unknown 13.7
1944 Female, age 72, unknown 13.1
1815 Male, age 53, unknown 12.0
1817 Female, age 42, unknown 11.2
Red nucleus
nTPM: 13.5
2588 Male, age 74, left hemisphere 21.4
2584 Male, age 75, left hemisphere 18.3
2725 Female, age 75, unknown 15.3
2769 Male, age 72, unknown 15.0
2227 Male, age 72, unknown 13.3
1904 Male, age 53, unknown 13.2
2503 Female, age 72, unknown 13.1
1954 Female, age 42, unknown 12.6
1821 Female, age 72, unknown 10.9
2823 Male, age 76, right hemisphere 10.0
2785 Male, age 18, unknown 9.4
1865 Male, age 51, unknown 8.7
Substantia nigra
nTPM: 33.5
2241 Male, age 72, unknown 50.6
2699 Male, age 18, unknown 50.1
1916 Female, age 42, unknown 47.0
1941 Male, age 53, unknown 41.5
1851 Male, age 51, unknown 40.6
2665 Male, age 74, both hemispheres 37.8
2409 Female, age 72, unknown 19.8
1889 Female, age 72, unknown 19.6
2583 Male, age 75, right hemisphere 14.2
2590 Female, age 75, unknown 13.9
Superior colliculus
nTPM: 19.7
1895 Male, age 76, right hemisphere 35.9
1839 Male, age 51, unknown 32.1
2587 Male, age 74, left hemisphere 19.4
2664 Male, age 75, both hemispheres 19.2
1796 Male, age 53, unknown 19.1
2087 Female, age 72, unknown 17.5
2261 Male, age 18, unknown 17.0
2668 Female, age 75, unknown 14.1
1995 Male, age 72, unknown 11.4
1913 Female, age 42, unknown 11.3
Ventral tegmental area
nTPM: 33.5
2218 Male, age 76, both hemispheres 52.5
1915 Female, age 42, unknown 39.4
1942 Male, age 51, unknown 38.8
2410 Female, age 72, unknown 26.5
2021 Male, age 53, unknown 23.3
2223 Female, age 72, unknown 20.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 5.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 5.1
Samples: 139

Max nTPM: 15.4
Min nTPM: 0.5
Std nTPM: 2.4
Median nTPM: 5.0
GTEX-18464-0011-R2a-SM-731AL 50-59 years, male 15.4
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 14.7
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 11.6
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 10.6
GTEX-1LSNL-0011-R2a-SM-EZ6MK 50-59 years, male 10.6
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 9.7
GTEX-16Z82-0011-R2b-SM-79OK9 60-69 years, male 9.6
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 9.4
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 9.2
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 8.6
GTEX-1GMR8-0011-R2a-SM-CE6RD 50-59 years, female 8.5
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 15.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 15.2
FF:10158-103A5 76 years, female 15.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 3.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 3.3
Samples: 4

Max nTPM: 3.7
Min nTPM: 2.3
Sample A Male 2.3
Sample B Male 3.5
Sample C Female 3.7
Sample D Female 3.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 8.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 8.3
69782784 Antisense, RP_050505_03_G05, Mouse strain C57BL/6J (56 days, male) 8.3

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org