BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:45.0 nTPM
HPA Brain:103.7 nTPM
GTEx:45.0 nTPM
FANTOM5:99.8 Scaled Tags Per Million
Pig:26.8 nTPM
Mouse:20.4 nTPM
Allen mouse:0.1 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 103.7
Sample id Sample description nTPM
Caudate nucleus
nTPM: 78.7
2481 Female, age 94, left hemisphere 100.0
2288 Male, age 75, left hemisphere 98.1
2289 Male, age 61, right hemisphere 86.9
2846 Female, age 79, unknown 76.4
2290 Female, age 72, unknown 75.0
1854 Male, age 80, left hemisphere 68.0
1857 Female, age 85, left hemisphere 66.6
1781 Male, age 74, unknown 58.4
Globus pallidus, externus
nTPM: 95.6
1996 Male, age 80, right hemisphere 120.8
2646 Male, age 61, right hemisphere 112.1
2772 Female, age 79, unknown 110.4
2395 Male, age 75, both hemispheres 72.2
2567 Female, age 72, unknown 62.8
Globus pallidus, internus
nTPM: 103.7
2037 Male, age 80, right hemisphere 124.1
1818 Male, age 74, unknown 113.4
2111 Female, age 85, right hemisphere 111.7
2287 Male, age 75, right hemisphere 104.4
2483 Female, age 94, right hemisphere 101.9
2778 Female, age 91, both hemispheres 95.6
2566 Female, age 72, unknown 74.8
Nucleus accumbens
nTPM: 78.6
2391 Female, age 94, left hemisphere 117.8
2698 Female, age 72, unknown 98.8
2286 Male, age 75, left hemisphere 94.0
2732 Male, age 80, right hemisphere 90.7
1806 Female, age 85, left hemisphere 69.6
1783 Male, age 74, unknown 54.4
1856 Female, age 91, right hemisphere 54.2
2824 Male, age 61, right hemisphere 49.0
Nucleus basalis of Meynert
nTPM: 88.2
2569 Male, age 61, both hemispheres 114.1
2484 Female, age 94, left hemisphere 85.6
2821 Male, age 75, both hemispheres 77.3
2393 Male, age 80, right hemisphere 75.9
Nucleus of the diagonal band
nTPM: 43.8
1979 Male, age 74, unknown 57.0
1812 Female, age 91, both hemispheres 51.9
2029 Male, age 61, right hemisphere 37.3
2775 Male, age 80, right hemisphere 37.3
2195 Female, age 85, both hemispheres 35.8
Putamen
nTPM: 71.1
2482 Female, age 94, left hemisphere 95.4
1829 Male, age 74, unknown 95.1
2489 Female, age 72, unknown 70.7
1937 Female, age 91, right hemisphere 67.6
2466 Female, age 79, unknown 59.7
2647 Male, age 75, left hemisphere 57.7
1838 Male, age 80, right hemisphere 51.7
Septal nuclei
nTPM: 60.5
2199 Male, age 80, right hemisphere 82.2
2629 Female, age 94, right hemisphere 71.9
2394 Male, age 61, left hemisphere 71.6
2009 Female, age 91, both hemispheres 63.5
2059 Female, age 85, both hemispheres 57.5
2031 Female, age 72, unknown 46.1
1960 Male, age 74, unknown 30.8
Stria terminalis, bed nucleus
nTPM: 42.2
2201 Male, age 74, unknown 44.9
1974 Female, age 91, both hemispheres 42.5
2486 Female, age 94, both hemispheres 39.1

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 45.0
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 45.0
Samples: 246

Max nTPM: 121.9
Min nTPM: 13.9
Std nTPM: 18.4
Median nTPM: 42.6
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 121.9
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 112.6
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 105.6
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 101.0
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 90.7
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 83.8
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 82.9
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 80.4
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 79.7
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 78.6
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 78.5
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 29.6
Samples: 246

Max nTPM: 117.8
Min nTPM: 10.4
Std nTPM: 16.1
Median nTPM: 24.9
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 117.8
GTEX-P44H-0011-R6A-SM-2XCF3 40-49 years, male 93.8
GTEX-13PDP-0011-R6b-SM-5O9D5 60-69 years, male 93.5
GTEX-1CB4J-0011-R6b-SM-9WG7B 60-69 years, male 79.8
GTEX-ZUA1-0011-R6b-SM-4YCDD 40-49 years, male 78.1
GTEX-14PHW-0011-R6b-SM-5YYAR 60-69 years, female 75.4
GTEX-T5JC-0011-R6A-SM-D3L87 20-29 years, male 70.3
GTEX-13PL6-0011-R6a-SM-5O9C5 40-49 years, female 69.0
GTEX-1F75B-0011-R6a-SM-ARZMI 50-59 years, male 68.4
GTEX-1E2YA-0011-R6b-SM-CE6R2 50-59 years, male 67.8
GTEX-16XZZ-0011-R6a-SM-7IGNE 60-69 years, male 65.5
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Brain - Putamen (basal ganglia)
Average nTPM: 44.4
Samples: 205

Max nTPM: 158.7
Min nTPM: 14.7
Std nTPM: 19.9
Median nTPM: 40.7
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 158.7
GTEX-1F6I4-0011-R7a-SM-CJI24 60-69 years, male 109.3
GTEX-ZVT3-0011-R7a-SM-57WCO 60-69 years, female 99.2
GTEX-14LZ3-0011-R7a-SM-69LQN 60-69 years, female 98.2
GTEX-1E2YA-0011-R7a-SM-CJI1Z 50-59 years, male 98.2
GTEX-13QJC-0011-R7b-SM-5PNUM 60-69 years, female 97.4
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 97.0
GTEX-1H23P-0011-R7b-SM-CKZP2 60-69 years, male 90.0
GTEX-1H4P4-0011-R7b-SM-ARU77 50-59 years, male 87.9
GTEX-X261-0011-R7A-SM-4E3JJ 50-59 years, male 81.3
GTEX-QMR6-0011-R7A-SM-32PKL 50-59 years, male 81.2
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 99.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 57.2
FF:10164-103B2 76 years, female 57.2
Nucleus accumbens
Scaled Tags Per Million: 44.8
FF:10037-101F1 23-56 years, mixed 44.8
Putamen
Scaled Tags Per Million: 37.1
FF:10176-103C5 60 years, female 37.1
Globus pallidus
Scaled Tags Per Million: 99.8
FF:10161-103A8 76 years, female 111.7
FF:10175-103C4 60 years, female 87.8

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 26.8
Pig sample Sample description nTPM
Caudate
nTPM: 21.2
Samples: 4

Max nTPM: 24.7
Min nTPM: 18.3
Sample A Female 24.7
Sample B Female 21.2
Sample C Male 20.7
Sample D Male 18.3
Putamen
nTPM: 25.3
Samples: 4

Max nTPM: 40.1
Min nTPM: 15.9
Sample A Female 40.1
Sample B Female 15.9
Sample C Male 19.9
Sample D Male 25.2
Septum
nTPM: 26.7
Samples: 4

Max nTPM: 32.6
Min nTPM: 22.7
Sample A Female 32.6
Sample B Female 22.7
Sample C Male 25.1
Sample D Male 26.5
Ventral pallidum
nTPM: 26.8
Samples: 4

Max nTPM: 38.9
Min nTPM: 19.1
Sample A Female 23.4
Sample B Female 19.1
Sample C Male 25.8
Sample D Male 38.9

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 20.4
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 20.4
Samples: 4

Max nTPM: 20.7
Min nTPM: 20.0
Sample A Male 20.6
Sample B Male 20.3
Sample C Female 20.0
Sample D Female 20.7
Septum
nTPM: 19.7
Samples: 4

Max nTPM: 23.5
Min nTPM: 13.4
Sample A Male 13.4
Sample B Male 20.8
Sample C Female 23.5
Sample D Female 21.2
Ventral forebrain
nTPM: 14.2
Samples: 4

Max nTPM: 14.9
Min nTPM: 13.6
Sample A Male 13.6
Sample B Male 13.7
Sample C Female 14.5
Sample D Female 14.9

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.1
68080674 Antisense, RP_040929_01_D04, Mouse strain C57BL/6J (56 days, male) 0.1
Pallidum
Expression energy: 0.1
68080674 Antisense, RP_040929_01_D04, Mouse strain C57BL/6J (56 days, male) 0.1

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