MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:20.2 nTPM
HPA Brain:23.4 nTPM
GTEx:20.2 nTPM
FANTOM5:58.0 Scaled Tags Per Million
Pig:45.4 nTPM
Mouse:78.4 nTPM
Allen mouse:3.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 23.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 18.9
2666 Male, age 74, left hemisphere 21.7
1830 Male, age 51, unknown 20.8
1870 Female, age 42, unknown 20.3
1833 Male, age 53, unknown 20.2
2828 Female, age 72, unknown 19.1
1827 Male, age 72, unknown 19.0
2219 Male, age 76, both hemispheres 18.7
2411 Female, age 72, unknown 18.5
2019 Male, age 18, unknown 16.3
2586 Male, age 75, left hemisphere 14.2
Dorsal raphe nucleus
nTPM: 18.6
2016 Female, age 72, unknown 20.2
2047 Male, age 72, unknown 19.9
2750 Male, age 76, both hemispheres 19.0
1828 Male, age 53, unknown 17.6
2298 Female, age 72, unknown 16.4
Inferior colliculus
nTPM: 18.8
1848 Female, age 42, unknown 19.3
1890 Male, age 53, unknown 19.1
2097 Female, age 72, unknown 18.5
2849 Male, age 72, unknown 18.4
Median raphe nucleus
nTPM: 23.4
2220 Male, age 76, midline 23.4
Periaquaductal grey, anterior
nTPM: 22.2
1947 Male, age 18, unknown 26.6
2502 Female, age 75, unknown 21.0
1795 Male, age 51, unknown 19.0
Periaquaductal grey, dorsal
nTPM: 18.8
2850 Male, age 76, both hemispheres 20.9
2464 Female, age 72, unknown 18.5
1831 Male, age 72, unknown 18.1
1840 Male, age 53, unknown 17.4
Periaquaductal grey, lateral
nTPM: 19.2
2053 Male, age 18, unknown 21.0
2272 Male, age 74, both hemispheres 18.4
2140 Male, age 76, both hemispheres 18.1
Pretectal area
nTPM: 20.1
2407 Male, age 75, both hemispheres 22.8
1816 Male, age 51, unknown 22.6
2825 Male, age 18, unknown 21.1
2316 Male, age 76, right hemisphere 20.5
2007 Male, age 72, unknown 20.3
1944 Female, age 72, unknown 19.7
2667 Female, age 75, unknown 19.7
2224 Female, age 72, unknown 19.3
1815 Male, age 53, unknown 18.8
2273 Male, age 74, both hemispheres 18.6
1817 Female, age 42, unknown 18.0
Red nucleus
nTPM: 18.4
2588 Male, age 74, left hemisphere 20.9
2823 Male, age 76, right hemisphere 19.8
2584 Male, age 75, left hemisphere 19.6
1865 Male, age 51, unknown 19.0
2503 Female, age 72, unknown 19.0
1821 Female, age 72, unknown 18.9
1904 Male, age 53, unknown 18.6
2725 Female, age 75, unknown 18.4
1954 Female, age 42, unknown 17.2
2769 Male, age 72, unknown 16.6
2227 Male, age 72, unknown 16.5
2785 Male, age 18, unknown 16.4
Substantia nigra
nTPM: 19.6
2241 Male, age 72, unknown 24.2
1941 Male, age 53, unknown 21.5
2409 Female, age 72, unknown 21.5
2665 Male, age 74, both hemispheres 20.2
2590 Female, age 75, unknown 19.9
2583 Male, age 75, right hemisphere 18.7
1851 Male, age 51, unknown 18.1
1889 Female, age 72, unknown 17.5
2699 Male, age 18, unknown 17.5
1916 Female, age 42, unknown 17.4
Superior colliculus
nTPM: 19.6
1895 Male, age 76, right hemisphere 21.2
2668 Female, age 75, unknown 20.5
1913 Female, age 42, unknown 20.2
2261 Male, age 18, unknown 20.1
2587 Male, age 74, left hemisphere 19.7
1839 Male, age 51, unknown 19.5
2087 Female, age 72, unknown 19.3
1796 Male, age 53, unknown 18.7
1995 Male, age 72, unknown 18.7
2664 Male, age 75, both hemispheres 18.2
Ventral tegmental area
nTPM: 18.9
1915 Female, age 42, unknown 19.8
2021 Male, age 53, unknown 19.8
2223 Female, age 72, unknown 19.7
1942 Male, age 51, unknown 18.3
2410 Female, age 72, unknown 18.3
2218 Male, age 76, both hemispheres 17.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 20.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 20.2
Samples: 139

Max nTPM: 36.5
Min nTPM: 9.8
Std nTPM: 4.7
Median nTPM: 19.8
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 36.5
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 33.2
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 33.2
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 31.4
GTEX-S7SE-0011-R2A-SM-2XCDC 50-59 years, male 29.6
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 29.5
GTEX-1IKJJ-0011-R2b-SM-ARZLJ 60-69 years, male 29.2
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 28.9
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 28.0
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 27.8
GTEX-P44G-0011-R2A-SM-2XCD2 30-39 years, male 27.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 58.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 58.0
FF:10158-103A5 76 years, female 58.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 45.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 39.9
Samples: 4

Max nTPM: 52.4
Min nTPM: 28.6
Sample A Female 52.4
Sample B Female 34.6
Sample C Male 44.0
Sample D Male 28.6
Midbrain
nTPM: 45.4
Samples: 4

Max nTPM: 46.4
Min nTPM: 44.6
Sample A Female 45.5
Sample B Female 44.6
Sample C Male 46.4
Sample D Male 45.2
Periaqueductal gray
nTPM: 41.1
Samples: 3

Max nTPM: 44.7
Min nTPM: 37.5
Sample B Female 37.5
Sample C Male 44.7
Sample D Male 41.0
Superior colliculi
nTPM: 42.9
Samples: 4

Max nTPM: 52.2
Min nTPM: 36.4
Sample A Female 52.2
Sample B Female 36.4
Sample C Male 42.4
Sample D Male 40.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 78.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 78.5
Samples: 4

Max nTPM: 85.1
Min nTPM: 70.1
Sample A Male 83.0
Sample B Male 75.6
Sample C Female 70.1
Sample D Female 85.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 3.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.5
68798950 Antisense, RP_050217_01_F06, Mouse strain C57BL/6J (56 days, male) 3.5

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