MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:16.7 nTPM
HPA Brain:32.6 nTPM
GTEx:16.7 nTPM
FANTOM5:6.3 Scaled Tags Per Million
Pig:44.1 nTPM
Mouse:24.5 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 32.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 26.7
2219 Male, age 76, both hemispheres 32.2
1833 Male, age 53, unknown 29.9
2411 Female, age 72, unknown 29.6
2666 Male, age 74, left hemisphere 29.2
1830 Male, age 51, unknown 28.8
1827 Male, age 72, unknown 27.5
2828 Female, age 72, unknown 27.2
1870 Female, age 42, unknown 23.9
2019 Male, age 18, unknown 20.5
2586 Male, age 75, left hemisphere 17.8
Dorsal raphe nucleus
nTPM: 29.0
2750 Male, age 76, both hemispheres 30.5
2016 Female, age 72, unknown 30.0
1828 Male, age 53, unknown 29.8
2047 Male, age 72, unknown 29.3
2298 Female, age 72, unknown 25.1
Inferior colliculus
nTPM: 27.9
2849 Male, age 72, unknown 30.0
1848 Female, age 42, unknown 29.6
1890 Male, age 53, unknown 27.7
2097 Female, age 72, unknown 24.4
Median raphe nucleus
nTPM: 32.6
2220 Male, age 76, midline 32.6
Periaquaductal grey, anterior
nTPM: 28.5
1947 Male, age 18, unknown 29.7
1795 Male, age 51, unknown 29.0
2502 Female, age 75, unknown 26.7
Periaquaductal grey, dorsal
nTPM: 31.2
2850 Male, age 76, both hemispheres 37.0
1840 Male, age 53, unknown 29.7
1831 Male, age 72, unknown 29.0
2464 Female, age 72, unknown 29.0
Periaquaductal grey, lateral
nTPM: 31.0
2272 Male, age 74, both hemispheres 32.9
2140 Male, age 76, both hemispheres 30.3
2053 Male, age 18, unknown 29.9
Pretectal area
nTPM: 27.2
2825 Male, age 18, unknown 35.9
2667 Female, age 75, unknown 35.5
2224 Female, age 72, unknown 33.1
2273 Male, age 74, both hemispheres 32.2
2316 Male, age 76, right hemisphere 31.3
2407 Male, age 75, both hemispheres 26.2
1817 Female, age 42, unknown 21.9
1815 Male, age 53, unknown 21.4
1944 Female, age 72, unknown 20.8
1816 Male, age 51, unknown 20.4
2007 Male, age 72, unknown 20.3
Red nucleus
nTPM: 24.6
2823 Male, age 76, right hemisphere 28.1
1865 Male, age 51, unknown 26.1
1904 Male, age 53, unknown 25.8
2503 Female, age 72, unknown 25.6
2227 Male, age 72, unknown 24.5
2725 Female, age 75, unknown 24.3
1954 Female, age 42, unknown 24.2
1821 Female, age 72, unknown 24.1
2769 Male, age 72, unknown 23.9
2588 Male, age 74, left hemisphere 23.7
2584 Male, age 75, left hemisphere 22.5
2785 Male, age 18, unknown 22.1
Substantia nigra
nTPM: 30.8
2241 Male, age 72, unknown 44.1
2409 Female, age 72, unknown 37.0
2699 Male, age 18, unknown 34.4
1916 Female, age 42, unknown 32.2
1851 Male, age 51, unknown 30.9
1941 Male, age 53, unknown 29.9
2665 Male, age 74, both hemispheres 27.3
2583 Male, age 75, right hemisphere 26.0
2590 Female, age 75, unknown 24.1
1889 Female, age 72, unknown 22.3
Superior colliculus
nTPM: 25.7
1895 Male, age 76, right hemisphere 30.3
2664 Male, age 75, both hemispheres 28.8
1839 Male, age 51, unknown 28.5
2587 Male, age 74, left hemisphere 26.2
1796 Male, age 53, unknown 25.8
2668 Female, age 75, unknown 25.7
2087 Female, age 72, unknown 24.4
2261 Male, age 18, unknown 23.3
1913 Female, age 42, unknown 22.0
1995 Male, age 72, unknown 21.8
Ventral tegmental area
nTPM: 28.7
2218 Male, age 76, both hemispheres 32.3
1915 Female, age 42, unknown 31.4
2021 Male, age 53, unknown 30.1
1942 Male, age 51, unknown 27.4
2410 Female, age 72, unknown 26.3
2223 Female, age 72, unknown 24.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 16.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 16.7
Samples: 139

Max nTPM: 26.0
Min nTPM: 8.0
Std nTPM: 3.5
Median nTPM: 16.7
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 26.0
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 24.5
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 24.3
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 23.5
GTEX-13G51-0011-R2b-SM-5LZXS 60-69 years, male 23.1
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 23.0
GTEX-T2IS-0011-R2A-SM-32QPF 20-29 years, female 22.9
GTEX-X585-0011-R2B-SM-46MVF 50-59 years, male 22.4
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 21.8
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 21.5
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 21.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 6.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 6.3
FF:10158-103A5 76 years, female 6.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 44.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 40.3
Samples: 4

Max nTPM: 51.8
Min nTPM: 35.0
Sample A Female 51.8
Sample B Female 35.0
Sample C Male 37.1
Sample D Male 37.1
Midbrain
nTPM: 44.1
Samples: 4

Max nTPM: 61.3
Min nTPM: 31.5
Sample A Female 61.3
Sample B Female 45.9
Sample C Male 31.5
Sample D Male 37.6
Periaqueductal gray
nTPM: 35.5
Samples: 3

Max nTPM: 37.4
Min nTPM: 32.9
Sample B Female 37.4
Sample C Male 32.9
Sample D Male 36.3
Superior colliculi
nTPM: 44.1
Samples: 4

Max nTPM: 51.5
Min nTPM: 40.9
Sample A Female 51.5
Sample B Female 40.9
Sample C Male 41.6
Sample D Male 42.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 24.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 24.5
Samples: 4

Max nTPM: 27.4
Min nTPM: 22.9
Sample A Male 27.4
Sample B Male 23.8
Sample C Female 24.0
Sample D Female 22.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
69116775 Antisense, RP_050321_01_B06, Mouse strain C57BL/6J (56 days, male) 0.1

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