MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:12.6 nTPM
HPA Brain:37.9 nTPM
GTEx:12.6 nTPM
FANTOM5:10.4 Scaled Tags Per Million
Pig:44.7 nTPM
Mouse:58.5 nTPM
Allen mouse:5.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 37.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 36.9
2586 Male, age 75, left hemisphere 45.3
2219 Male, age 76, both hemispheres 44.1
2411 Female, age 72, unknown 38.4
1830 Male, age 51, unknown 37.5
2019 Male, age 18, unknown 36.7
1833 Male, age 53, unknown 36.0
1870 Female, age 42, unknown 35.0
2666 Male, age 74, left hemisphere 34.6
1827 Male, age 72, unknown 31.2
2828 Female, age 72, unknown 30.2
Dorsal raphe nucleus
nTPM: 30.2
2016 Female, age 72, unknown 34.0
2750 Male, age 76, both hemispheres 32.2
1828 Male, age 53, unknown 29.9
2047 Male, age 72, unknown 28.6
2298 Female, age 72, unknown 26.1
Inferior colliculus
nTPM: 33.1
2097 Female, age 72, unknown 34.2
1890 Male, age 53, unknown 34.1
1848 Female, age 42, unknown 32.6
2849 Male, age 72, unknown 31.6
Median raphe nucleus
nTPM: 24.7
2220 Male, age 76, midline 24.7
Periaquaductal grey, anterior
nTPM: 31.6
2502 Female, age 75, unknown 36.9
1947 Male, age 18, unknown 32.8
1795 Male, age 51, unknown 25.0
Periaquaductal grey, dorsal
nTPM: 28.7
2464 Female, age 72, unknown 34.0
1831 Male, age 72, unknown 29.9
1840 Male, age 53, unknown 29.2
2850 Male, age 76, both hemispheres 21.8
Periaquaductal grey, lateral
nTPM: 28.0
2053 Male, age 18, unknown 29.9
2272 Male, age 74, both hemispheres 29.1
2140 Male, age 76, both hemispheres 25.1
Pretectal area
nTPM: 30.9
1815 Male, age 53, unknown 35.6
2007 Male, age 72, unknown 33.8
2407 Male, age 75, both hemispheres 33.7
1817 Female, age 42, unknown 32.3
1816 Male, age 51, unknown 31.8
2316 Male, age 76, right hemisphere 31.1
2825 Male, age 18, unknown 30.0
1944 Female, age 72, unknown 29.7
2273 Male, age 74, both hemispheres 28.1
2224 Female, age 72, unknown 26.9
2667 Female, age 75, unknown 26.4
Red nucleus
nTPM: 37.9
2503 Female, age 72, unknown 40.9
2785 Male, age 18, unknown 40.6
1865 Male, age 51, unknown 40.1
2584 Male, age 75, left hemisphere 39.6
2588 Male, age 74, left hemisphere 39.1
1904 Male, age 53, unknown 38.9
2227 Male, age 72, unknown 38.8
1821 Female, age 72, unknown 38.6
2769 Male, age 72, unknown 38.5
1954 Female, age 42, unknown 36.4
2725 Female, age 75, unknown 33.6
2823 Male, age 76, right hemisphere 29.9
Substantia nigra
nTPM: 32.0
2583 Male, age 75, right hemisphere 37.8
2409 Female, age 72, unknown 36.0
2590 Female, age 75, unknown 33.6
1851 Male, age 51, unknown 32.7
2241 Male, age 72, unknown 31.9
1889 Female, age 72, unknown 31.7
1941 Male, age 53, unknown 30.5
2665 Male, age 74, both hemispheres 29.2
1916 Female, age 42, unknown 28.9
2699 Male, age 18, unknown 28.1
Superior colliculus
nTPM: 34.4
1913 Female, age 42, unknown 36.7
1995 Male, age 72, unknown 36.6
1895 Male, age 76, right hemisphere 36.3
2668 Female, age 75, unknown 35.9
1839 Male, age 51, unknown 35.7
2664 Male, age 75, both hemispheres 35.1
2587 Male, age 74, left hemisphere 34.8
2261 Male, age 18, unknown 32.8
1796 Male, age 53, unknown 31.2
2087 Female, age 72, unknown 28.4
Ventral tegmental area
nTPM: 30.4
2410 Female, age 72, unknown 36.0
2223 Female, age 72, unknown 33.2
1942 Male, age 51, unknown 31.2
1915 Female, age 42, unknown 29.9
2021 Male, age 53, unknown 27.8
2218 Male, age 76, both hemispheres 24.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 12.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 12.6
Samples: 139

Max nTPM: 23.9
Min nTPM: 6.6
Std nTPM: 3.4
Median nTPM: 12.2
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 23.9
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 23.6
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 20.2
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 20.1
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 19.9
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 19.9
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 19.8
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 19.6
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 19.2
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 19.1
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 18.7
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 10.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 10.4
FF:10158-103A5 76 years, female 10.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 44.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 37.3
Samples: 4

Max nTPM: 42.9
Min nTPM: 32.5
Sample A Female 41.0
Sample B Female 32.5
Sample C Male 32.6
Sample D Male 42.9
Midbrain
nTPM: 44.7
Samples: 4

Max nTPM: 61.1
Min nTPM: 38.2
Sample A Female 61.1
Sample B Female 39.8
Sample C Male 39.6
Sample D Male 38.2
Periaqueductal gray
nTPM: 34.9
Samples: 3

Max nTPM: 38.3
Min nTPM: 32.8
Sample B Female 38.3
Sample C Male 32.8
Sample D Male 33.7
Superior colliculi
nTPM: 40.8
Samples: 4

Max nTPM: 44.1
Min nTPM: 36.4
Sample A Female 42.3
Sample B Female 36.4
Sample C Male 40.4
Sample D Male 44.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 58.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 58.5
Samples: 4

Max nTPM: 64.0
Min nTPM: 52.1
Sample A Male 52.1
Sample B Male 59.5
Sample C Female 64.0
Sample D Female 58.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 5.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 5.5
75831719 Antisense, RP_060601_02_A04, Mouse strain C57BL/6J (56 days, male) 5.5

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org