MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:213.1 nTPM
HPA Brain:88.6 nTPM
GTEx:213.1 nTPM
FANTOM5:95.8 Scaled Tags Per Million
Pig:25.0 nTPM
Mouse:781.8 nTPM
Allen mouse:12.3 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 88.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 69.9
2019 Male, age 18, unknown 110.1
2411 Female, age 72, unknown 95.9
1827 Male, age 72, unknown 83.8
2828 Female, age 72, unknown 68.7
1870 Female, age 42, unknown 64.1
2219 Male, age 76, both hemispheres 61.2
1833 Male, age 53, unknown 58.5
2666 Male, age 74, left hemisphere 52.7
1830 Male, age 51, unknown 52.2
2586 Male, age 75, left hemisphere 51.8
Dorsal raphe nucleus
nTPM: 85.2
2298 Female, age 72, unknown 124.8
1828 Male, age 53, unknown 91.7
2047 Male, age 72, unknown 83.7
2750 Male, age 76, both hemispheres 68.8
2016 Female, age 72, unknown 57.0
Inferior colliculus
nTPM: 77.6
2097 Female, age 72, unknown 119.4
1890 Male, age 53, unknown 81.1
1848 Female, age 42, unknown 64.5
2849 Male, age 72, unknown 45.4
Median raphe nucleus
nTPM: 60.3
2220 Male, age 76, midline 60.3
Periaquaductal grey, anterior
nTPM: 68.1
1947 Male, age 18, unknown 70.9
1795 Male, age 51, unknown 67.0
2502 Female, age 75, unknown 66.3
Periaquaductal grey, dorsal
nTPM: 55.7
1840 Male, age 53, unknown 61.0
1831 Male, age 72, unknown 58.3
2464 Female, age 72, unknown 57.7
2850 Male, age 76, both hemispheres 45.6
Periaquaductal grey, lateral
nTPM: 54.2
2272 Male, age 74, both hemispheres 58.7
2053 Male, age 18, unknown 56.9
2140 Male, age 76, both hemispheres 47.0
Pretectal area
nTPM: 88.5
2007 Male, age 72, unknown 132.4
1816 Male, age 51, unknown 116.5
1817 Female, age 42, unknown 112.6
1944 Female, age 72, unknown 112.2
2667 Female, age 75, unknown 91.8
1815 Male, age 53, unknown 90.2
2273 Male, age 74, both hemispheres 78.3
2224 Female, age 72, unknown 72.3
2316 Male, age 76, right hemisphere 61.9
2825 Male, age 18, unknown 52.5
2407 Male, age 75, both hemispheres 52.4
Red nucleus
nTPM: 68.7
1821 Female, age 72, unknown 103.0
2785 Male, age 18, unknown 80.4
2725 Female, age 75, unknown 77.9
2823 Male, age 76, right hemisphere 72.8
2503 Female, age 72, unknown 70.9
1865 Male, age 51, unknown 63.9
2588 Male, age 74, left hemisphere 62.9
2769 Male, age 72, unknown 62.6
1954 Female, age 42, unknown 61.6
2227 Male, age 72, unknown 60.1
1904 Male, age 53, unknown 56.7
2584 Male, age 75, left hemisphere 52.2
Substantia nigra
nTPM: 88.6
1916 Female, age 42, unknown 118.5
1889 Female, age 72, unknown 117.8
1851 Male, age 51, unknown 107.0
1941 Male, age 53, unknown 106.9
2241 Male, age 72, unknown 99.8
2665 Male, age 74, both hemispheres 80.1
2409 Female, age 72, unknown 79.5
2590 Female, age 75, unknown 62.1
2699 Male, age 18, unknown 59.0
2583 Male, age 75, right hemisphere 55.7
Superior colliculus
nTPM: 67.9
2087 Female, age 72, unknown 96.6
1895 Male, age 76, right hemisphere 80.5
2668 Female, age 75, unknown 75.3
2261 Male, age 18, unknown 73.0
2587 Male, age 74, left hemisphere 69.0
1796 Male, age 53, unknown 67.1
1839 Male, age 51, unknown 57.6
1913 Female, age 42, unknown 56.1
1995 Male, age 72, unknown 53.4
2664 Male, age 75, both hemispheres 50.7
Ventral tegmental area
nTPM: 76.8
2410 Female, age 72, unknown 114.7
1915 Female, age 42, unknown 92.5
2218 Male, age 76, both hemispheres 75.4
1942 Male, age 51, unknown 69.0
2021 Male, age 53, unknown 55.5
2223 Female, age 72, unknown 53.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 213.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 213.1
Samples: 139

Max nTPM: 592.1
Min nTPM: 98.5
Std nTPM: 76.6
Median nTPM: 195.3
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 592.1
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 460.1
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 418.7
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 410.0
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 389.7
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 385.8
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 380.9
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 373.7
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 345.0
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 321.5
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 315.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 95.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 95.8
FF:10158-103A5 76 years, female 95.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 25.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 18.5
Samples: 4

Max nTPM: 23.6
Min nTPM: 15.4
Sample A Female 23.6
Sample B Female 15.7
Sample C Male 19.4
Sample D Male 15.4
Midbrain
nTPM: 20.5
Samples: 4

Max nTPM: 23.6
Min nTPM: 17.8
Sample A Female 17.8
Sample B Female 18.3
Sample C Male 23.6
Sample D Male 22.2
Periaqueductal gray
nTPM: 17.4
Samples: 3

Max nTPM: 18.8
Min nTPM: 16.1
Sample B Female 17.4
Sample C Male 18.8
Sample D Male 16.1
Superior colliculi
nTPM: 25.0
Samples: 4

Max nTPM: 28.9
Min nTPM: 19.8
Sample A Female 28.0
Sample B Female 23.2
Sample C Male 28.9
Sample D Male 19.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 781.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 781.8
Samples: 4

Max nTPM: 836.5
Min nTPM: 717.3
Sample A Male 836.5
Sample B Male 796.1
Sample C Female 717.3
Sample D Female 777.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 12.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 12.3
69526970 Antisense, RP_050421_02_A07, Mouse strain C57BL/6J (56 days, male) 12.3

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