MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:37.9 nTPM
HPA Brain:203.8 nTPM
GTEx:37.9 nTPM
FANTOM5:99.1 Scaled Tags Per Million
Pig:110.7 nTPM
Mouse:29.1 nTPM
Allen mouse:0.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 203.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 147.7
2666 Male, age 74, left hemisphere 173.8
2219 Male, age 76, both hemispheres 166.9
2586 Male, age 75, left hemisphere 159.6
1827 Male, age 72, unknown 154.9
2828 Female, age 72, unknown 152.7
2019 Male, age 18, unknown 145.3
1833 Male, age 53, unknown 135.1
2411 Female, age 72, unknown 133.2
1830 Male, age 51, unknown 128.4
1870 Female, age 42, unknown 126.6
Dorsal raphe nucleus
nTPM: 142.4
2047 Male, age 72, unknown 159.5
2750 Male, age 76, both hemispheres 157.9
1828 Male, age 53, unknown 141.7
2298 Female, age 72, unknown 138.8
2016 Female, age 72, unknown 114.0
Inferior colliculus
nTPM: 125.0
2849 Male, age 72, unknown 134.6
1890 Male, age 53, unknown 125.3
2097 Female, age 72, unknown 123.2
1848 Female, age 42, unknown 117.0
Median raphe nucleus
nTPM: 203.8
2220 Male, age 76, midline 203.8
Periaquaductal grey, anterior
nTPM: 160.2
1795 Male, age 51, unknown 169.3
1947 Male, age 18, unknown 159.5
2502 Female, age 75, unknown 151.7
Periaquaductal grey, dorsal
nTPM: 137.0
2850 Male, age 76, both hemispheres 154.7
1831 Male, age 72, unknown 143.2
1840 Male, age 53, unknown 132.2
2464 Female, age 72, unknown 117.7
Periaquaductal grey, lateral
nTPM: 139.6
2140 Male, age 76, both hemispheres 146.3
2053 Male, age 18, unknown 137.6
2272 Male, age 74, both hemispheres 135.0
Pretectal area
nTPM: 159.1
1816 Male, age 51, unknown 204.1
1944 Female, age 72, unknown 183.7
1815 Male, age 53, unknown 176.8
1817 Female, age 42, unknown 176.6
2007 Male, age 72, unknown 173.3
2407 Male, age 75, both hemispheres 168.2
2667 Female, age 75, unknown 156.9
2825 Male, age 18, unknown 133.1
2224 Female, age 72, unknown 132.3
2316 Male, age 76, right hemisphere 126.0
2273 Male, age 74, both hemispheres 118.6
Red nucleus
nTPM: 135.8
2584 Male, age 75, left hemisphere 165.3
2725 Female, age 75, unknown 155.8
2823 Male, age 76, right hemisphere 149.5
2785 Male, age 18, unknown 142.9
2588 Male, age 74, left hemisphere 134.2
1821 Female, age 72, unknown 132.0
1904 Male, age 53, unknown 131.6
2503 Female, age 72, unknown 129.6
1865 Male, age 51, unknown 127.6
1954 Female, age 42, unknown 122.1
2769 Male, age 72, unknown 121.6
2227 Male, age 72, unknown 117.5
Substantia nigra
nTPM: 174.7
1916 Female, age 42, unknown 230.4
2665 Male, age 74, both hemispheres 186.2
1851 Male, age 51, unknown 182.8
2241 Male, age 72, unknown 180.8
1941 Male, age 53, unknown 178.1
2699 Male, age 18, unknown 166.5
1889 Female, age 72, unknown 166.4
2583 Male, age 75, right hemisphere 155.0
2409 Female, age 72, unknown 151.4
2590 Female, age 75, unknown 149.2
Superior colliculus
nTPM: 145.5
2261 Male, age 18, unknown 172.3
2087 Female, age 72, unknown 165.2
1796 Male, age 53, unknown 158.7
2664 Male, age 75, both hemispheres 158.3
2668 Female, age 75, unknown 153.4
1913 Female, age 42, unknown 137.2
1895 Male, age 76, right hemisphere 131.8
2587 Male, age 74, left hemisphere 131.7
1839 Male, age 51, unknown 127.3
1995 Male, age 72, unknown 118.7
Ventral tegmental area
nTPM: 160.3
2218 Male, age 76, both hemispheres 189.8
1915 Female, age 42, unknown 167.4
2410 Female, age 72, unknown 166.9
1942 Male, age 51, unknown 150.9
2021 Male, age 53, unknown 143.3
2223 Female, age 72, unknown 143.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 37.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 37.9
Samples: 139

Max nTPM: 71.4
Min nTPM: 19.9
Std nTPM: 10.4
Median nTPM: 36.0
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 71.4
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 70.4
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 67.8
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 67.3
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 67.2
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 59.9
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 58.4
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 57.6
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 56.8
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 56.7
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 54.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 99.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 99.1
FF:10158-103A5 76 years, female 99.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 110.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 105.8
Samples: 4

Max nTPM: 138.7
Min nTPM: 77.4
Sample A Female 125.4
Sample B Female 81.6
Sample C Male 138.7
Sample D Male 77.4
Midbrain
nTPM: 109.9
Samples: 4

Max nTPM: 175.8
Min nTPM: 76.4
Sample A Female 81.0
Sample B Female 76.4
Sample C Male 175.8
Sample D Male 106.3
Periaqueductal gray
nTPM: 78.7
Samples: 3

Max nTPM: 94.3
Min nTPM: 68.8
Sample B Female 72.9
Sample C Male 94.3
Sample D Male 68.8
Superior colliculi
nTPM: 110.8
Samples: 4

Max nTPM: 142.2
Min nTPM: 77.7
Sample A Female 108.2
Sample B Female 77.7
Sample C Male 142.2
Sample D Male 114.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 29.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 29.1
Samples: 4

Max nTPM: 31.1
Min nTPM: 25.6
Sample A Male 25.6
Sample B Male 29.3
Sample C Female 31.1
Sample D Female 30.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.7
68666894 Antisense, RP_050201_01_B11, Mouse strain C57BL/6J (56 days, male) 0.7

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