MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:51.2 nTPM
HPA Brain:92.5 nTPM
GTEx:51.2 nTPM
FANTOM5:28.2 Scaled Tags Per Million
Pig:89.2 nTPM
Mouse:166.6 nTPM
Allen mouse:12.0 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 92.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 76.2
2586 Male, age 75, left hemisphere 97.8
2666 Male, age 74, left hemisphere 93.8
2019 Male, age 18, unknown 84.6
1827 Male, age 72, unknown 82.7
2411 Female, age 72, unknown 74.4
2828 Female, age 72, unknown 71.1
1870 Female, age 42, unknown 68.8
2219 Male, age 76, both hemispheres 68.0
1833 Male, age 53, unknown 61.7
1830 Male, age 51, unknown 58.7
Dorsal raphe nucleus
nTPM: 82.3
2298 Female, age 72, unknown 102.4
2047 Male, age 72, unknown 94.3
2750 Male, age 76, both hemispheres 80.4
1828 Male, age 53, unknown 74.3
2016 Female, age 72, unknown 59.9
Inferior colliculus
nTPM: 69.4
2097 Female, age 72, unknown 77.2
1848 Female, age 42, unknown 69.5
2849 Male, age 72, unknown 67.7
1890 Male, age 53, unknown 63.0
Median raphe nucleus
nTPM: 92.5
2220 Male, age 76, midline 92.5
Periaquaductal grey, anterior
nTPM: 86.5
2502 Female, age 75, unknown 97.0
1795 Male, age 51, unknown 86.4
1947 Male, age 18, unknown 76.2
Periaquaductal grey, dorsal
nTPM: 68.2
1840 Male, age 53, unknown 80.6
2464 Female, age 72, unknown 67.8
2850 Male, age 76, both hemispheres 63.9
1831 Male, age 72, unknown 60.5
Periaquaductal grey, lateral
nTPM: 59.6
2053 Male, age 18, unknown 63.5
2140 Male, age 76, both hemispheres 59.8
2272 Male, age 74, both hemispheres 55.5
Pretectal area
nTPM: 79.6
1816 Male, age 51, unknown 108.6
2007 Male, age 72, unknown 102.1
1817 Female, age 42, unknown 99.0
1944 Female, age 72, unknown 98.0
1815 Male, age 53, unknown 84.1
2224 Female, age 72, unknown 76.5
2825 Male, age 18, unknown 69.8
2667 Female, age 75, unknown 69.6
2407 Male, age 75, both hemispheres 59.3
2273 Male, age 74, both hemispheres 55.0
2316 Male, age 76, right hemisphere 53.8
Red nucleus
nTPM: 62.0
2584 Male, age 75, left hemisphere 77.6
2785 Male, age 18, unknown 76.5
1821 Female, age 72, unknown 69.8
1954 Female, age 42, unknown 61.2
2725 Female, age 75, unknown 59.9
2769 Male, age 72, unknown 59.7
2588 Male, age 74, left hemisphere 59.6
2227 Male, age 72, unknown 59.5
2503 Female, age 72, unknown 58.5
1865 Male, age 51, unknown 55.8
1904 Male, age 53, unknown 55.3
2823 Male, age 76, right hemisphere 50.4
Substantia nigra
nTPM: 84.7
2665 Male, age 74, both hemispheres 102.6
1916 Female, age 42, unknown 100.4
1941 Male, age 53, unknown 100.4
1851 Male, age 51, unknown 92.2
1889 Female, age 72, unknown 92.1
2241 Male, age 72, unknown 88.8
2409 Female, age 72, unknown 72.6
2583 Male, age 75, right hemisphere 69.3
2590 Female, age 75, unknown 66.1
2699 Male, age 18, unknown 62.3
Superior colliculus
nTPM: 74.4
2668 Female, age 75, unknown 93.1
2664 Male, age 75, both hemispheres 90.0
2087 Female, age 72, unknown 88.5
1796 Male, age 53, unknown 82.8
2261 Male, age 18, unknown 81.8
1895 Male, age 76, right hemisphere 71.6
1839 Male, age 51, unknown 70.9
2587 Male, age 74, left hemisphere 62.5
1913 Female, age 42, unknown 53.8
1995 Male, age 72, unknown 49.1
Ventral tegmental area
nTPM: 78.1
2410 Female, age 72, unknown 89.4
2218 Male, age 76, both hemispheres 83.5
1915 Female, age 42, unknown 82.1
1942 Male, age 51, unknown 72.3
2021 Male, age 53, unknown 71.1
2223 Female, age 72, unknown 70.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 51.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 51.2
Samples: 139

Max nTPM: 155.2
Min nTPM: 22.3
Std nTPM: 22.9
Median nTPM: 46.0
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 155.2
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 132.8
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 121.6
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 112.2
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 109.8
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 104.8
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 91.1
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 83.3
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 82.2
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 81.0
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 80.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 28.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 28.2
FF:10158-103A5 76 years, female 28.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 89.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 88.3
Samples: 4

Max nTPM: 125.5
Min nTPM: 59.6
Sample A Female 125.5
Sample B Female 69.2
Sample C Male 99.0
Sample D Male 59.6
Midbrain
nTPM: 87.3
Samples: 4

Max nTPM: 93.9
Min nTPM: 83.3
Sample A Female 93.9
Sample B Female 87.7
Sample C Male 84.4
Sample D Male 83.3
Periaqueductal gray
nTPM: 82.1
Samples: 3

Max nTPM: 98.6
Min nTPM: 69.7
Sample B Female 78.1
Sample C Male 98.6
Sample D Male 69.7
Superior colliculi
nTPM: 89.3
Samples: 4

Max nTPM: 117.3
Min nTPM: 64.5
Sample A Female 117.3
Sample B Female 64.5
Sample C Male 94.2
Sample D Male 81.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 166.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 166.6
Samples: 4

Max nTPM: 170.7
Min nTPM: 159.5
Sample A Male 170.7
Sample B Male 167.5
Sample C Female 159.5
Sample D Female 168.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 12.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 12.0
69080068 Antisense, RP_050324_01_H07, Mouse strain C57BL/6J (56 days, male) 12.0

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