MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:19.5 nTPM
HPA Brain:26.1 nTPM
GTEx:19.5 nTPM
FANTOM5:18.7 Scaled Tags Per Million
Pig:170.1 nTPM
Mouse:16.3 nTPM
Allen mouse:0.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 26.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 16.8
2586 Male, age 75, left hemisphere 38.4
2828 Female, age 72, unknown 20.5
1827 Male, age 72, unknown 17.2
1870 Female, age 42, unknown 17.0
2411 Female, age 72, unknown 16.3
2666 Male, age 74, left hemisphere 15.7
1833 Male, age 53, unknown 13.3
1830 Male, age 51, unknown 12.7
2219 Male, age 76, both hemispheres 11.1
2019 Male, age 18, unknown 5.7
Dorsal raphe nucleus
nTPM: 26.1
2047 Male, age 72, unknown 37.2
1828 Male, age 53, unknown 27.3
2298 Female, age 72, unknown 24.8
2016 Female, age 72, unknown 23.0
2750 Male, age 76, both hemispheres 18.2
Inferior colliculus
nTPM: 15.9
2097 Female, age 72, unknown 17.2
1890 Male, age 53, unknown 16.7
2849 Male, age 72, unknown 16.7
1848 Female, age 42, unknown 13.3
Median raphe nucleus
nTPM: 15.6
2220 Male, age 76, midline 15.6
Periaquaductal grey, anterior
nTPM: 23.1
1795 Male, age 51, unknown 23.7
1947 Male, age 18, unknown 23.2
2502 Female, age 75, unknown 22.5
Periaquaductal grey, dorsal
nTPM: 21.8
1840 Male, age 53, unknown 28.1
1831 Male, age 72, unknown 22.5
2464 Female, age 72, unknown 18.5
2850 Male, age 76, both hemispheres 18.0
Periaquaductal grey, lateral
nTPM: 23.3
2053 Male, age 18, unknown 32.6
2140 Male, age 76, both hemispheres 21.0
2272 Male, age 74, both hemispheres 16.2
Pretectal area
nTPM: 15.0
2825 Male, age 18, unknown 27.6
2224 Female, age 72, unknown 19.9
2273 Male, age 74, both hemispheres 19.8
2407 Male, age 75, both hemispheres 18.6
2316 Male, age 76, right hemisphere 15.9
2667 Female, age 75, unknown 13.5
1816 Male, age 51, unknown 11.9
1944 Female, age 72, unknown 11.6
1815 Male, age 53, unknown 9.7
2007 Male, age 72, unknown 8.4
1817 Female, age 42, unknown 7.6
Red nucleus
nTPM: 11.6
2584 Male, age 75, left hemisphere 22.4
2725 Female, age 75, unknown 14.9
2588 Male, age 74, left hemisphere 13.5
2769 Male, age 72, unknown 12.7
2503 Female, age 72, unknown 12.3
2227 Male, age 72, unknown 11.2
2823 Male, age 76, right hemisphere 9.6
1954 Female, age 42, unknown 9.1
1865 Male, age 51, unknown 8.8
1904 Male, age 53, unknown 8.7
1821 Female, age 72, unknown 8.5
2785 Male, age 18, unknown 7.6
Substantia nigra
nTPM: 16.7
2583 Male, age 75, right hemisphere 23.9
2590 Female, age 75, unknown 20.5
2665 Male, age 74, both hemispheres 20.3
1851 Male, age 51, unknown 18.3
2699 Male, age 18, unknown 17.2
1941 Male, age 53, unknown 17.1
1916 Female, age 42, unknown 15.4
1889 Female, age 72, unknown 12.0
2241 Male, age 72, unknown 11.7
2409 Female, age 72, unknown 10.7
Superior colliculus
nTPM: 16.5
2664 Male, age 75, both hemispheres 31.0
2261 Male, age 18, unknown 18.5
1839 Male, age 51, unknown 18.3
2587 Male, age 74, left hemisphere 17.1
1796 Male, age 53, unknown 16.9
1995 Male, age 72, unknown 16.7
1913 Female, age 42, unknown 13.3
2087 Female, age 72, unknown 12.6
1895 Male, age 76, right hemisphere 10.5
2668 Female, age 75, unknown 9.8
Ventral tegmental area
nTPM: 17.6
1942 Male, age 51, unknown 22.3
2021 Male, age 53, unknown 21.3
1915 Female, age 42, unknown 19.6
2223 Female, age 72, unknown 14.3
2410 Female, age 72, unknown 14.2
2218 Male, age 76, both hemispheres 14.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 19.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 19.5
Samples: 139

Max nTPM: 51.5
Min nTPM: 5.9
Std nTPM: 8.2
Median nTPM: 18.1
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 51.5
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 44.8
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 39.8
GTEX-1H3O1-0011-R2b-SM-CKZOT 60-69 years, male 39.3
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 39.2
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 38.4
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 38.2
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 37.5
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 36.7
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 34.7
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 34.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 18.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 18.7
FF:10158-103A5 76 years, female 18.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 170.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 126.8
Samples: 4

Max nTPM: 145.0
Min nTPM: 115.5
Sample A Female 145.0
Sample B Female 115.5
Sample C Male 123.1
Sample D Male 123.7
Midbrain
nTPM: 170.2
Samples: 4

Max nTPM: 265.4
Min nTPM: 65.1
Sample A Female 265.4
Sample B Female 125.3
Sample C Male 224.8
Sample D Male 65.1
Periaqueductal gray
nTPM: 135.3
Samples: 3

Max nTPM: 159.2
Min nTPM: 116.7
Sample B Female 159.2
Sample C Male 116.7
Sample D Male 129.9
Superior colliculi
nTPM: 124.7
Samples: 4

Max nTPM: 185.7
Min nTPM: 82.2
Sample A Female 88.4
Sample B Female 82.2
Sample C Male 185.7
Sample D Male 142.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 16.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 16.3
Samples: 4

Max nTPM: 17.0
Min nTPM: 15.2
Sample A Male 17.0
Sample B Male 16.1
Sample C Female 15.2
Sample D Female 17.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.9
70743905 Antisense, RP_050725_02_A09, Mouse strain C57BL/6J (56 days, male) 1.5
67792191 Antisense, RP_040920_01_C09, Mouse strain C57BL/6J (56 days, male) 0.2

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