MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:31.8 nTPM
HPA Brain:28.2 nTPM
GTEx:31.8 nTPM
FANTOM5:15.4 Scaled Tags Per Million
Pig:28.2 nTPM
Mouse:18.9 nTPM
Allen mouse:1.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 28.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 28.2
2586 Male, age 75, left hemisphere 36.4
1827 Male, age 72, unknown 29.1
2411 Female, age 72, unknown 28.9
1833 Male, age 53, unknown 28.3
2828 Female, age 72, unknown 27.8
1870 Female, age 42, unknown 27.7
1830 Male, age 51, unknown 27.4
2666 Male, age 74, left hemisphere 27.2
2019 Male, age 18, unknown 26.3
2219 Male, age 76, both hemispheres 22.7
Dorsal raphe nucleus
nTPM: 25.2
2750 Male, age 76, both hemispheres 26.6
1828 Male, age 53, unknown 26.4
2047 Male, age 72, unknown 26.4
2016 Female, age 72, unknown 23.5
2298 Female, age 72, unknown 23.1
Inferior colliculus
nTPM: 25.5
1848 Female, age 42, unknown 27.3
2849 Male, age 72, unknown 26.5
2097 Female, age 72, unknown 25.9
1890 Male, age 53, unknown 22.5
Median raphe nucleus
nTPM: 26.2
2220 Male, age 76, midline 26.2
Periaquaductal grey, anterior
nTPM: 26.7
1947 Male, age 18, unknown 27.4
1795 Male, age 51, unknown 26.9
2502 Female, age 75, unknown 25.7
Periaquaductal grey, dorsal
nTPM: 23.0
2464 Female, age 72, unknown 24.7
1831 Male, age 72, unknown 24.0
2850 Male, age 76, both hemispheres 22.0
1840 Male, age 53, unknown 21.2
Periaquaductal grey, lateral
nTPM: 23.0
2053 Male, age 18, unknown 25.3
2140 Male, age 76, both hemispheres 22.0
2272 Male, age 74, both hemispheres 21.7
Pretectal area
nTPM: 26.0
2007 Male, age 72, unknown 29.5
1944 Female, age 72, unknown 28.8
1816 Male, age 51, unknown 28.3
1817 Female, age 42, unknown 26.4
1815 Male, age 53, unknown 25.5
2407 Male, age 75, both hemispheres 25.1
2224 Female, age 72, unknown 24.8
2273 Male, age 74, both hemispheres 24.6
2667 Female, age 75, unknown 24.6
2825 Male, age 18, unknown 24.4
2316 Male, age 76, right hemisphere 23.6
Red nucleus
nTPM: 28.0
2588 Male, age 74, left hemisphere 30.9
2725 Female, age 75, unknown 29.6
1904 Male, age 53, unknown 29.1
2503 Female, age 72, unknown 28.6
1865 Male, age 51, unknown 28.3
2227 Male, age 72, unknown 27.9
2785 Male, age 18, unknown 27.9
2584 Male, age 75, left hemisphere 27.8
2769 Male, age 72, unknown 27.6
1821 Female, age 72, unknown 27.1
1954 Female, age 42, unknown 26.5
2823 Male, age 76, right hemisphere 24.6
Substantia nigra
nTPM: 26.6
2409 Female, age 72, unknown 35.8
2583 Male, age 75, right hemisphere 31.6
1916 Female, age 42, unknown 28.3
1851 Male, age 51, unknown 27.9
2699 Male, age 18, unknown 26.6
1941 Male, age 53, unknown 25.4
1889 Female, age 72, unknown 24.9
2665 Male, age 74, both hemispheres 23.8
2590 Female, age 75, unknown 22.2
2241 Male, age 72, unknown 19.1
Superior colliculus
nTPM: 26.4
2668 Female, age 75, unknown 31.8
1796 Male, age 53, unknown 30.0
1913 Female, age 42, unknown 28.8
1995 Male, age 72, unknown 26.9
2087 Female, age 72, unknown 25.9
2664 Male, age 75, both hemispheres 25.9
2261 Male, age 18, unknown 25.8
1895 Male, age 76, right hemisphere 23.2
2587 Male, age 74, left hemisphere 23.0
1839 Male, age 51, unknown 22.4
Ventral tegmental area
nTPM: 26.2
2410 Female, age 72, unknown 28.7
2223 Female, age 72, unknown 27.5
2021 Male, age 53, unknown 26.4
1942 Male, age 51, unknown 26.2
1915 Female, age 42, unknown 25.9
2218 Male, age 76, both hemispheres 22.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 31.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 31.8
Samples: 139

Max nTPM: 55.3
Min nTPM: 17.7
Std nTPM: 6.7
Median nTPM: 31.1
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 55.3
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 53.6
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 52.9
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 48.4
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 47.8
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 47.1
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 45.2
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 45.1
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 44.0
GTEX-18464-0011-R2a-SM-731AL 50-59 years, male 42.0
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 41.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 15.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 15.4
FF:10158-103A5 76 years, female 15.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 28.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 27.3
Samples: 4

Max nTPM: 36.6
Min nTPM: 20.3
Sample A Female 36.6
Sample B Female 22.5
Sample C Male 29.6
Sample D Male 20.3
Midbrain
nTPM: 26.6
Samples: 4

Max nTPM: 28.0
Min nTPM: 25.4
Sample A Female 25.7
Sample B Female 27.1
Sample C Male 28.0
Sample D Male 25.4
Periaqueductal gray
nTPM: 26.4
Samples: 3

Max nTPM: 32.3
Min nTPM: 22.6
Sample B Female 22.6
Sample C Male 32.3
Sample D Male 24.2
Superior colliculi
nTPM: 28.2
Samples: 4

Max nTPM: 32.4
Min nTPM: 23.0
Sample A Female 32.4
Sample B Female 23.0
Sample C Male 30.6
Sample D Male 26.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 18.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 18.9
Samples: 4

Max nTPM: 21.4
Min nTPM: 17.1
Sample A Male 21.4
Sample B Male 18.5
Sample C Female 18.5
Sample D Female 17.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.0
71836831 Antisense, RP_051017_02_B06, Mouse strain C57BL/6J (56 days, male) 1.9
686193 Antisense, RP_040916_01_A01, Mouse strain C57BL/6J (56 days, male) 0.0

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