MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:37.6 nTPM
HPA Brain:19.0 nTPM
GTEx:37.6 nTPM
FANTOM5:12.9 Scaled Tags Per Million
Pig:18.9 nTPM
Mouse:4.5 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 19.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 14.4
2586 Male, age 75, left hemisphere 17.9
2666 Male, age 74, left hemisphere 17.8
2019 Male, age 18, unknown 15.4
1830 Male, age 51, unknown 14.5
2828 Female, age 72, unknown 14.4
1870 Female, age 42, unknown 13.7
1833 Male, age 53, unknown 12.7
1827 Male, age 72, unknown 12.6
2411 Female, age 72, unknown 12.5
2219 Male, age 76, both hemispheres 12.4
Dorsal raphe nucleus
nTPM: 17.3
1828 Male, age 53, unknown 21.2
2298 Female, age 72, unknown 18.4
2047 Male, age 72, unknown 17.4
2750 Male, age 76, both hemispheres 15.3
2016 Female, age 72, unknown 14.4
Inferior colliculus
nTPM: 15.2
2097 Female, age 72, unknown 17.3
1890 Male, age 53, unknown 16.0
1848 Female, age 42, unknown 13.7
2849 Male, age 72, unknown 13.7
Median raphe nucleus
nTPM: 14.6
2220 Male, age 76, midline 14.6
Periaquaductal grey, anterior
nTPM: 15.7
2502 Female, age 75, unknown 18.4
1795 Male, age 51, unknown 15.7
1947 Male, age 18, unknown 13.0
Periaquaductal grey, dorsal
nTPM: 12.8
1831 Male, age 72, unknown 15.3
2850 Male, age 76, both hemispheres 12.4
2464 Female, age 72, unknown 12.0
1840 Male, age 53, unknown 11.6
Periaquaductal grey, lateral
nTPM: 14.8
2272 Male, age 74, both hemispheres 17.8
2053 Male, age 18, unknown 14.9
2140 Male, age 76, both hemispheres 11.8
Pretectal area
nTPM: 14.5
2007 Male, age 72, unknown 17.6
2224 Female, age 72, unknown 16.5
2273 Male, age 74, both hemispheres 16.4
2667 Female, age 75, unknown 15.5
1944 Female, age 72, unknown 14.5
1817 Female, age 42, unknown 14.4
1815 Male, age 53, unknown 14.2
1816 Male, age 51, unknown 13.9
2316 Male, age 76, right hemisphere 12.8
2825 Male, age 18, unknown 12.0
2407 Male, age 75, both hemispheres 11.7
Red nucleus
nTPM: 16.2
2725 Female, age 75, unknown 19.0
2823 Male, age 76, right hemisphere 17.0
2769 Male, age 72, unknown 16.8
1821 Female, age 72, unknown 16.6
2785 Male, age 18, unknown 16.6
2584 Male, age 75, left hemisphere 16.5
2503 Female, age 72, unknown 16.2
2588 Male, age 74, left hemisphere 16.0
1865 Male, age 51, unknown 15.6
2227 Male, age 72, unknown 15.4
1954 Female, age 42, unknown 14.9
1904 Male, age 53, unknown 13.7
Substantia nigra
nTPM: 19.0
1916 Female, age 42, unknown 34.6
1851 Male, age 51, unknown 25.3
2699 Male, age 18, unknown 23.0
1941 Male, age 53, unknown 20.8
2665 Male, age 74, both hemispheres 17.4
1889 Female, age 72, unknown 15.8
2583 Male, age 75, right hemisphere 15.0
2409 Female, age 72, unknown 14.1
2241 Male, age 72, unknown 12.8
2590 Female, age 75, unknown 11.5
Superior colliculus
nTPM: 13.9
1995 Male, age 72, unknown 16.4
2587 Male, age 74, left hemisphere 16.2
1796 Male, age 53, unknown 15.5
1913 Female, age 42, unknown 14.8
2668 Female, age 75, unknown 14.4
2261 Male, age 18, unknown 13.7
2087 Female, age 72, unknown 13.1
1895 Male, age 76, right hemisphere 12.3
1839 Male, age 51, unknown 12.1
2664 Male, age 75, both hemispheres 10.5
Ventral tegmental area
nTPM: 18.4
1915 Female, age 42, unknown 24.0
2218 Male, age 76, both hemispheres 20.4
2223 Female, age 72, unknown 17.8
2410 Female, age 72, unknown 17.1
2021 Male, age 53, unknown 15.9
1942 Male, age 51, unknown 15.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 37.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 37.6
Samples: 139

Max nTPM: 161.8
Min nTPM: 13.9
Std nTPM: 18.3
Median nTPM: 33.5
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 161.8
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 126.6
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 83.1
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 79.4
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 78.9
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 68.4
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 67.6
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 66.0
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 65.8
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 61.4
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 60.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 12.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 12.9
FF:10158-103A5 76 years, female 12.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 18.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 16.4
Samples: 4

Max nTPM: 21.8
Min nTPM: 14.0
Sample A Female 14.0
Sample B Female 15.3
Sample C Male 21.8
Sample D Male 14.4
Midbrain
nTPM: 15.4
Samples: 4

Max nTPM: 17.4
Min nTPM: 13.5
Sample A Female 16.1
Sample B Female 13.5
Sample C Male 17.4
Sample D Male 14.6
Periaqueductal gray
nTPM: 17.3
Samples: 3

Max nTPM: 21.3
Min nTPM: 15.0
Sample B Female 15.7
Sample C Male 21.3
Sample D Male 15.0
Superior colliculi
nTPM: 18.9
Samples: 4

Max nTPM: 23.6
Min nTPM: 14.8
Sample A Female 16.3
Sample B Female 20.8
Sample C Male 23.6
Sample D Male 14.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 4.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 4.6
Samples: 4

Max nTPM: 4.8
Min nTPM: 4.3
Sample A Male 4.8
Sample B Male 4.3
Sample C Female 4.6
Sample D Female 4.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
74427086 Antisense, RP_051206_03_A09, Mouse strain C57BL/6J (56 days, male) 0.0

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