HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Medium
Neuronal cells: Medium
RNA expressioni
Consensus:45.8 nTPM
HPA Brain:47.4 nTPM
GTEx:45.8 nTPM
FANTOM5:130.3 Scaled Tags Per Million
Pig:100.5 nTPM
Mouse:246.0 nTPM
Allen mouse:14.8 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA055140Antibody HPA061953
Glial cells Not detectedHigh
Neuronal cells Not detectedHigh





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 47.4
Sample id Sample description nTPM
Hippocampus
nTPM: 39.2
1898 Male, age 80, left hemisphere 62.3
2621 Female, age 67, right hemisphere 40.2
2529 Female, age 94, left hemisphere 36.7
1855 Male, age 76, left hemisphere 33.4
1911 Female, age 85, right hemisphere 32.6
2148 Female, age 91, left hemisphere 30.0
Dentate gyrus
nTPM: 36.6
2010 Male, age 76, both hemispheres 47.0
2530 Female, age 94, left hemisphere 40.3
1927 Female, age 91, both hemispheres 38.2
2246 Female, age 85, both hemispheres 37.5
2528 Male, age 74, both hemispheres 31.4
2531 Female, age 67, both hemispheres 25.2
Entorhinal gyrus
nTPM: 41.3
2764 Male, age 80, right hemisphere 59.1
1938 Female, age 85, left hemisphere 44.8
1787 Male, age 76, left hemisphere 39.7
2117 Female, age 91, right hemisphere 37.7
2613 Female, age 94, left hemisphere 36.8
2686 Male, age 75, right hemisphere 29.5
Hippocampus, CA1
nTPM: 44.4
2749 Male, age 80, left hemisphere 76.7
1873 Female, age 85, both hemispheres 44.7
2527 Male, age 74, both hemispheres 37.5
2045 Male, age 76, both hemispheres 31.8
2082 Female, age 91, right hemisphere 31.4
Hippocampus, CA2
nTPM: 43.5
1963 Male, age 80, left hemisphere 58.1
1892 Male, age 76, both hemispheres 57.9
2249 Male, age 74, both hemispheres 50.9
1940 Female, age 85, left hemisphere 34.2
2437 Female, age 94, left hemisphere 31.2
2113 Female, age 91, right hemisphere 28.6
Hippocampus, CA3
nTPM: 44.9
2436 Male, age 74, both hemispheres 75.6
2137 Male, age 80, left hemisphere 55.8
1867 Male, age 76, both hemispheres 48.9
1891 Female, age 85, both hemispheres 38.5
2620 Female, age 94, left hemisphere 29.3
2861 Female, age 67, both hemispheres 21.1
Parahippocampal cortex
nTPM: 37.2
1850 Male, age 80, both hemispheres 55.7
1990 Female, age 91, right hemisphere 42.0
1933 Female, age 85, both hemispheres 39.7
2018 Male, age 76, both hemispheres 38.3
2532 Female, age 72, left hemisphere 37.7
2250 Female, age 67, right hemisphere 37.1
2245 Female, age 91, both hemispheres 36.9
2692 Male, age 74, both hemispheres 31.1
2693 Female, age 94, both hemispheres 29.8
2622 Female, age 67, right hemisphere 24.0
Perirhinal gyrus
nTPM: 47.4
1794 Male, age 80, right hemisphere 61.3
1847 Female, age 91, left hemisphere 53.5
1841 Female, age 85, right hemisphere 43.8
2521 Female, age 94, right hemisphere 42.4
2848 Male, age 76, right hemisphere 36.3
Subiculum
nTPM: 36.5
1901 Male, age 80, both hemispheres 53.7
1977 Female, age 85, both hemispheres 47.1
2042 Male, age 76, both hemispheres 37.3
2619 Male, age 74, both hemispheres 31.1
2438 Female, age 94, left hemisphere 25.3
2729 Female, age 91, right hemisphere 24.3

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 45.8
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 45.8
Samples: 197

Max nTPM: 82.4
Min nTPM: 21.9
Std nTPM: 14.1
Median nTPM: 44.1
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 82.4
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 82.2
GTEX-1313W-0011-R1b-SM-5EQ4A 50-59 years, female 81.8
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 81.7
GTEX-14C5O-0011-R1b-SM-6AJBW 60-69 years, male 76.8
GTEX-12WSF-0011-R1a-SM-5DUVI 70-79 years, male 75.4
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 73.7
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 73.4
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 72.8
GTEX-1GF9W-0011-R1a-SM-9QEIQ 60-69 years, male 72.7
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 70.7
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 130.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 130.3
FF:10169-103B7 60 years, female 153.7
FF:10153-102I9 76 years, female 106.9

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 100.5
Pig sample Sample description nTPM
Subiculum
nTPM: 76.2
Samples: 4

Max nTPM: 97.2
Min nTPM: 63.7
Sample A Female 97.2
Sample B Female 74.9
Sample C Male 69.0
Sample D Male 63.7
Dorsal hippocampus
nTPM: 100.5
Samples: 4

Max nTPM: 122.5
Min nTPM: 77.0
Sample A Female 122.5
Sample B Female 99.3
Sample C Male 103.0
Sample D Male 77.0
Entorhinal cortex
nTPM: 87.5
Samples: 4

Max nTPM: 112.6
Min nTPM: 71.6
Sample A Female 87.7
Sample B Female 112.6
Sample C Male 78.2
Sample D Male 71.6
Ventral hippocampus
nTPM: 90.8
Samples: 4

Max nTPM: 104.3
Min nTPM: 65.5
Sample A Female 95.1
Sample B Female 65.5
Sample C Male 104.3
Sample D Male 98.3

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 246.0
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 230.3
Samples: 4

Max nTPM: 240.5
Min nTPM: 213.4
Sample A Male 230.3
Sample B Male 237.0
Sample C Female 240.5
Sample D Female 213.4
Hippocampal formation
nTPM: 246.0
Samples: 4

Max nTPM: 267.6
Min nTPM: 225.7
Sample A Male 267.6
Sample B Male 225.7
Sample C Female 245.9
Sample D Female 244.7

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 14.8
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 14.8
74818622 Antisense, RP_060315_02_B01, Mouse strain C57BL/6J (56 days, male) 15.5
634469 Antisense, RP_040914_01_B09, Mouse strain C57BL/6J (56 days, male) 14.2

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