MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:50.2 nTPM
HPA Brain:50.3 nTPM
GTEx:50.2 nTPM
FANTOM5:172.6 Scaled Tags Per Million
Pig:144.4 nTPM
Mouse:287.8 nTPM
Allen mouse:13.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 50.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 42.9
2411 Female, age 72, unknown 53.7
1827 Male, age 72, unknown 49.4
2019 Male, age 18, unknown 49.0
1870 Female, age 42, unknown 46.1
2666 Male, age 74, left hemisphere 45.5
2828 Female, age 72, unknown 42.3
2219 Male, age 76, both hemispheres 42.2
1830 Male, age 51, unknown 37.1
1833 Male, age 53, unknown 36.6
2586 Male, age 75, left hemisphere 27.1
Dorsal raphe nucleus
nTPM: 41.7
2298 Female, age 72, unknown 50.5
1828 Male, age 53, unknown 44.3
2047 Male, age 72, unknown 43.5
2750 Male, age 76, both hemispheres 42.5
2016 Female, age 72, unknown 28.0
Inferior colliculus
nTPM: 42.5
2097 Female, age 72, unknown 47.3
1848 Female, age 42, unknown 41.7
1890 Male, age 53, unknown 41.4
2849 Male, age 72, unknown 39.6
Median raphe nucleus
nTPM: 41.0
2220 Male, age 76, midline 41.0
Periaquaductal grey, anterior
nTPM: 38.7
1947 Male, age 18, unknown 46.4
1795 Male, age 51, unknown 41.4
2502 Female, age 75, unknown 28.5
Periaquaductal grey, dorsal
nTPM: 33.8
1840 Male, age 53, unknown 35.7
2464 Female, age 72, unknown 34.9
1831 Male, age 72, unknown 33.9
2850 Male, age 76, both hemispheres 30.4
Periaquaductal grey, lateral
nTPM: 36.3
2272 Male, age 74, both hemispheres 47.5
2053 Male, age 18, unknown 32.8
2140 Male, age 76, both hemispheres 28.5
Pretectal area
nTPM: 49.3
2667 Female, age 75, unknown 69.1
1817 Female, age 42, unknown 63.4
2007 Male, age 72, unknown 62.9
1816 Male, age 51, unknown 62.2
1944 Female, age 72, unknown 58.2
1815 Male, age 53, unknown 48.7
2224 Female, age 72, unknown 42.6
2273 Male, age 74, both hemispheres 39.4
2825 Male, age 18, unknown 36.3
2316 Male, age 76, right hemisphere 32.8
2407 Male, age 75, both hemispheres 27.0
Red nucleus
nTPM: 43.5
1821 Female, age 72, unknown 60.6
2725 Female, age 75, unknown 48.4
2503 Female, age 72, unknown 47.8
2823 Male, age 76, right hemisphere 47.3
2785 Male, age 18, unknown 46.5
2588 Male, age 74, left hemisphere 41.5
1904 Male, age 53, unknown 40.5
2769 Male, age 72, unknown 40.2
1954 Female, age 42, unknown 39.9
1865 Male, age 51, unknown 39.5
2227 Male, age 72, unknown 38.8
2584 Male, age 75, left hemisphere 30.7
Substantia nigra
nTPM: 50.3
1916 Female, age 42, unknown 71.9
1941 Male, age 53, unknown 59.5
1851 Male, age 51, unknown 57.2
1889 Female, age 72, unknown 57.0
2409 Female, age 72, unknown 54.3
2241 Male, age 72, unknown 45.0
2665 Male, age 74, both hemispheres 43.8
2699 Male, age 18, unknown 42.3
2583 Male, age 75, right hemisphere 36.8
2590 Female, age 75, unknown 35.1
Superior colliculus
nTPM: 41.1
2087 Female, age 72, unknown 50.8
1895 Male, age 76, right hemisphere 47.6
1796 Male, age 53, unknown 46.3
2668 Female, age 75, unknown 45.2
2587 Male, age 74, left hemisphere 45.1
2261 Male, age 18, unknown 42.7
1913 Female, age 42, unknown 40.4
1839 Male, age 51, unknown 36.7
1995 Male, age 72, unknown 33.3
2664 Male, age 75, both hemispheres 22.3
Ventral tegmental area
nTPM: 46.7
2410 Female, age 72, unknown 62.5
1915 Female, age 42, unknown 52.9
2218 Male, age 76, both hemispheres 50.8
2223 Female, age 72, unknown 42.4
1942 Male, age 51, unknown 37.0
2021 Male, age 53, unknown 34.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 50.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 50.2
Samples: 139

Max nTPM: 146.9
Min nTPM: 23.5
Std nTPM: 18.9
Median nTPM: 45.0
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 146.9
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 115.3
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 99.5
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 93.1
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 87.6
GTEX-X585-0011-R2B-SM-46MVF 50-59 years, male 86.8
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 84.5
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 83.9
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 83.4
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 83.3
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 80.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 172.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 172.6
FF:10158-103A5 76 years, female 172.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 144.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 104.3
Samples: 4

Max nTPM: 128.2
Min nTPM: 80.8
Sample A Female 128.2
Sample B Female 80.8
Sample C Male 99.2
Sample D Male 109.0
Midbrain
nTPM: 127.7
Samples: 4

Max nTPM: 145.5
Min nTPM: 103.4
Sample A Female 145.4
Sample B Female 103.4
Sample C Male 145.5
Sample D Male 116.3
Periaqueductal gray
nTPM: 90.7
Samples: 3

Max nTPM: 99.5
Min nTPM: 77.8
Sample B Female 99.5
Sample C Male 94.7
Sample D Male 77.8
Superior colliculi
nTPM: 144.5
Samples: 4

Max nTPM: 186.2
Min nTPM: 104.0
Sample A Female 161.0
Sample B Female 104.0
Sample C Male 186.2
Sample D Male 126.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 287.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 287.8
Samples: 4

Max nTPM: 295.6
Min nTPM: 274.2
Sample A Male 293.2
Sample B Male 288.2
Sample C Female 274.2
Sample D Female 295.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 13.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 13.3
74818622 Antisense, RP_060315_02_B01, Mouse strain C57BL/6J (56 days, male) 15.3
634469 Antisense, RP_040914_01_B09, Mouse strain C57BL/6J (56 days, male) 11.2

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