HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: High
RNA expressioni
Consensus:34.9 nTPM
HPA Brain:90.6 nTPM
GTEx:34.9 nTPM
FANTOM5:263.1 Scaled Tags Per Million
Pig:87.4 nTPM
Mouse:56.4 nTPM
Allen mouse:11.8 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA023535
Glial cells Low
Neuronal cells High


HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 90.6
Sample id Sample description nTPM
Hippocampus
nTPM: 85.5
2529 Female, age 94, left hemisphere 89.2
2621 Female, age 67, right hemisphere 86.6
1911 Female, age 85, right hemisphere 85.2
1898 Male, age 80, left hemisphere 84.6
2148 Female, age 91, left hemisphere 84.1
1855 Male, age 76, left hemisphere 83.3
Dentate gyrus
nTPM: 83.9
2010 Male, age 76, both hemispheres 88.5
2528 Male, age 74, both hemispheres 86.1
2530 Female, age 94, left hemisphere 85.1
2246 Female, age 85, both hemispheres 82.9
1927 Female, age 91, both hemispheres 81.4
2531 Female, age 67, both hemispheres 79.2
Entorhinal gyrus
nTPM: 86.0
2117 Female, age 91, right hemisphere 97.4
2764 Male, age 80, right hemisphere 88.4
1938 Female, age 85, left hemisphere 85.3
2686 Male, age 75, right hemisphere 83.5
1787 Male, age 76, left hemisphere 80.8
2613 Female, age 94, left hemisphere 80.8
Hippocampus, CA1
nTPM: 86.3
2749 Male, age 80, left hemisphere 92.4
1873 Female, age 85, both hemispheres 91.9
2527 Male, age 74, both hemispheres 86.9
2082 Female, age 91, right hemisphere 83.5
2045 Male, age 76, both hemispheres 76.7
Hippocampus, CA2
nTPM: 84.5
1963 Male, age 80, left hemisphere 91.7
2249 Male, age 74, both hemispheres 89.5
1940 Female, age 85, left hemisphere 87.3
2113 Female, age 91, right hemisphere 85.5
1892 Male, age 76, both hemispheres 77.8
2437 Female, age 94, left hemisphere 75.5
Hippocampus, CA3
nTPM: 89.1
2436 Male, age 74, both hemispheres 100.4
1891 Female, age 85, both hemispheres 91.7
2861 Female, age 67, both hemispheres 91.1
2620 Female, age 94, left hemisphere 87.3
2137 Male, age 80, left hemisphere 85.7
1867 Male, age 76, both hemispheres 78.5
Parahippocampal cortex
nTPM: 84.4
2692 Male, age 74, both hemispheres 93.3
1850 Male, age 80, both hemispheres 90.4
2622 Female, age 67, right hemisphere 89.0
2532 Female, age 72, left hemisphere 85.6
1990 Female, age 91, right hemisphere 84.5
2245 Female, age 91, both hemispheres 84.5
1933 Female, age 85, both hemispheres 83.4
2250 Female, age 67, right hemisphere 79.0
2693 Female, age 94, both hemispheres 77.8
2018 Male, age 76, both hemispheres 76.8
Perirhinal gyrus
nTPM: 85.7
1841 Female, age 85, right hemisphere 92.1
1794 Male, age 80, right hemisphere 88.7
1847 Female, age 91, left hemisphere 84.1
2521 Female, age 94, right hemisphere 83.5
2848 Male, age 76, right hemisphere 79.8
Subiculum
nTPM: 90.6
1901 Male, age 80, both hemispheres 92.8
2619 Male, age 74, both hemispheres 91.4
1977 Female, age 85, both hemispheres 90.7
2042 Male, age 76, both hemispheres 90.6
2438 Female, age 94, left hemisphere 89.4
2729 Female, age 91, right hemisphere 88.6

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 34.9
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 34.9
Samples: 197

Max nTPM: 57.1
Min nTPM: 16.2
Std nTPM: 6.9
Median nTPM: 35.0
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 57.1
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 55.3
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 54.8
GTEX-1GZHY-0011-R1a-SM-CE6RR 50-59 years, female 53.8
GTEX-UTHO-0011-R1A-SM-3GIJO 60-69 years, male 49.1
GTEX-15UF6-0011-R1a-SM-9QEGH 70-79 years, female 49.1
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 48.9
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 48.8
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 48.6
GTEX-1F6IF-0011-R1b-SM-9WG78 60-69 years, male 47.7
GTEX-X4EP-0011-R1A-SM-3P624 60-69 years, female 47.3
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 263.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 263.1
FF:10169-103B7 60 years, female 265.8
FF:10153-102I9 76 years, female 260.4

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 87.4
Pig sample Sample description nTPM
Subiculum
nTPM: 83.5
Samples: 4

Max nTPM: 93.3
Min nTPM: 77.0
Sample A Female 93.3
Sample B Female 80.3
Sample C Male 83.5
Sample D Male 77.0
Dorsal hippocampus
nTPM: 87.4
Samples: 4

Max nTPM: 95.7
Min nTPM: 72.0
Sample A Female 93.5
Sample B Female 88.5
Sample C Male 95.7
Sample D Male 72.0
Entorhinal cortex
nTPM: 78.6
Samples: 4

Max nTPM: 85.6
Min nTPM: 72.5
Sample A Female 85.6
Sample B Female 76.5
Sample C Male 79.8
Sample D Male 72.5
Ventral hippocampus
nTPM: 84.5
Samples: 4

Max nTPM: 91.0
Min nTPM: 73.9
Sample A Female 87.2
Sample B Female 73.9
Sample C Male 91.0
Sample D Male 86.0

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 56.4
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 54.9
Samples: 4

Max nTPM: 56.2
Min nTPM: 52.8
Sample A Male 55.2
Sample B Male 52.8
Sample C Female 55.5
Sample D Female 56.2
Hippocampal formation
nTPM: 56.4
Samples: 4

Max nTPM: 66.5
Min nTPM: 48.1
Sample A Male 49.9
Sample B Male 61.0
Sample C Female 66.5
Sample D Female 48.1

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 11.8
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 11.8
996 Antisense, RP_Baylor_103045, Mouse strain C57BL/6J (56 days, male) 11.8
997 Antisense, RP_Baylor_103045, Mouse strain C57BL/6J (56 days, male) 4.3

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