MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:35.6 nTPM
HPA Brain:97.0 nTPM
GTEx:35.6 nTPM
FANTOM5:295.5 Scaled Tags Per Million
Pig:96.3 nTPM
Mouse:51.2 nTPM
Allen mouse:7.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 97.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 94.0
2019 Male, age 18, unknown 105.7
2411 Female, age 72, unknown 98.3
1833 Male, age 53, unknown 96.9
1830 Male, age 51, unknown 96.6
1870 Female, age 42, unknown 94.9
2828 Female, age 72, unknown 94.5
1827 Male, age 72, unknown 93.1
2666 Male, age 74, left hemisphere 92.2
2586 Male, age 75, left hemisphere 86.6
2219 Male, age 76, both hemispheres 81.6
Dorsal raphe nucleus
nTPM: 93.2
2750 Male, age 76, both hemispheres 96.7
2016 Female, age 72, unknown 94.5
2047 Male, age 72, unknown 92.0
2298 Female, age 72, unknown 92.0
1828 Male, age 53, unknown 90.9
Inferior colliculus
nTPM: 92.1
2849 Male, age 72, unknown 93.0
2097 Female, age 72, unknown 92.7
1848 Female, age 42, unknown 91.8
1890 Male, age 53, unknown 90.7
Median raphe nucleus
nTPM: 94.4
2220 Male, age 76, midline 94.4
Periaquaductal grey, anterior
nTPM: 90.7
2502 Female, age 75, unknown 93.5
1947 Male, age 18, unknown 92.1
1795 Male, age 51, unknown 86.5
Periaquaductal grey, dorsal
nTPM: 94.4
2850 Male, age 76, both hemispheres 104.1
1840 Male, age 53, unknown 91.4
1831 Male, age 72, unknown 91.1
2464 Female, age 72, unknown 90.9
Periaquaductal grey, lateral
nTPM: 95.2
2140 Male, age 76, both hemispheres 107.1
2053 Male, age 18, unknown 89.6
2272 Male, age 74, both hemispheres 88.8
Pretectal area
nTPM: 94.9
1817 Female, age 42, unknown 102.1
1815 Male, age 53, unknown 98.4
2316 Male, age 76, right hemisphere 98.4
2273 Male, age 74, both hemispheres 98.3
2007 Male, age 72, unknown 97.4
1944 Female, age 72, unknown 95.3
2667 Female, age 75, unknown 95.3
1816 Male, age 51, unknown 94.6
2224 Female, age 72, unknown 89.1
2407 Male, age 75, both hemispheres 88.0
2825 Male, age 18, unknown 87.5
Red nucleus
nTPM: 97.0
1904 Male, age 53, unknown 103.0
1821 Female, age 72, unknown 101.8
2785 Male, age 18, unknown 101.3
1865 Male, age 51, unknown 101.2
1954 Female, age 42, unknown 100.2
2503 Female, age 72, unknown 98.8
2588 Male, age 74, left hemisphere 94.7
2823 Male, age 76, right hemisphere 94.6
2227 Male, age 72, unknown 94.2
2769 Male, age 72, unknown 93.5
2725 Female, age 75, unknown 92.8
2584 Male, age 75, left hemisphere 87.5
Substantia nigra
nTPM: 94.1
2409 Female, age 72, unknown 101.3
2590 Female, age 75, unknown 97.6
2241 Male, age 72, unknown 96.3
1889 Female, age 72, unknown 94.6
1941 Male, age 53, unknown 94.5
2665 Male, age 74, both hemispheres 92.5
2583 Male, age 75, right hemisphere 91.6
1851 Male, age 51, unknown 91.4
1916 Female, age 42, unknown 90.7
2699 Male, age 18, unknown 90.1
Superior colliculus
nTPM: 93.1
1913 Female, age 42, unknown 103.1
1995 Male, age 72, unknown 98.4
2261 Male, age 18, unknown 93.0
1895 Male, age 76, right hemisphere 92.5
1839 Male, age 51, unknown 92.4
2587 Male, age 74, left hemisphere 91.8
1796 Male, age 53, unknown 91.5
2668 Female, age 75, unknown 90.1
2087 Female, age 72, unknown 89.7
2664 Male, age 75, both hemispheres 88.5
Ventral tegmental area
nTPM: 89.7
2410 Female, age 72, unknown 93.2
2218 Male, age 76, both hemispheres 92.0
1942 Male, age 51, unknown 90.7
2223 Female, age 72, unknown 90.7
1915 Female, age 42, unknown 86.2
2021 Male, age 53, unknown 85.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 35.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 35.6
Samples: 139

Max nTPM: 53.6
Min nTPM: 20.2
Std nTPM: 5.9
Median nTPM: 36.0
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 53.6
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 50.6
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 47.7
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 47.0
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 46.6
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 45.9
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 45.8
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 45.5
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 45.3
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 45.1
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 44.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 295.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 295.5
FF:10158-103A5 76 years, female 295.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 96.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 92.7
Samples: 4

Max nTPM: 94.8
Min nTPM: 90.5
Sample A Female 94.8
Sample B Female 91.2
Sample C Male 90.5
Sample D Male 94.3
Midbrain
nTPM: 96.3
Samples: 4

Max nTPM: 112.8
Min nTPM: 81.9
Sample A Female 112.8
Sample B Female 85.8
Sample C Male 104.7
Sample D Male 81.9
Periaqueductal gray
nTPM: 86.2
Samples: 3

Max nTPM: 89.2
Min nTPM: 82.5
Sample B Female 89.2
Sample C Male 86.8
Sample D Male 82.5
Superior colliculi
nTPM: 92.7
Samples: 4

Max nTPM: 97.5
Min nTPM: 87.9
Sample A Female 91.9
Sample B Female 93.3
Sample C Male 97.5
Sample D Male 87.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 51.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 51.2
Samples: 4

Max nTPM: 54.9
Min nTPM: 44.1
Sample A Male 44.1
Sample B Male 54.9
Sample C Female 54.2
Sample D Female 51.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 7.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 7.9
996 Antisense, RP_Baylor_103045, Mouse strain C57BL/6J (56 days, male) 7.9
997 Antisense, RP_Baylor_103045, Mouse strain C57BL/6J (56 days, male) 1.0

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