MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:28.9 nTPM
HPA Brain:69.0 nTPM
GTEx:28.9 nTPM
FANTOM5:132.9 Scaled Tags Per Million
Pig:33.6 nTPM
Mouse:44.7 nTPM
Allen mouse:3.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 69.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 69.0
2666 Male, age 74, left hemisphere 83.6
2411 Female, age 72, unknown 72.4
2019 Male, age 18, unknown 71.8
1830 Male, age 51, unknown 70.6
1870 Female, age 42, unknown 70.3
2828 Female, age 72, unknown 68.9
2586 Male, age 75, left hemisphere 67.6
1827 Male, age 72, unknown 67.3
1833 Male, age 53, unknown 66.2
2219 Male, age 76, both hemispheres 51.3
Dorsal raphe nucleus
nTPM: 60.7
2750 Male, age 76, both hemispheres 70.2
2047 Male, age 72, unknown 61.4
1828 Male, age 53, unknown 61.1
2298 Female, age 72, unknown 56.8
2016 Female, age 72, unknown 53.9
Inferior colliculus
nTPM: 54.2
2849 Male, age 72, unknown 55.0
2097 Female, age 72, unknown 54.2
1848 Female, age 42, unknown 53.9
1890 Male, age 53, unknown 53.8
Median raphe nucleus
nTPM: 67.5
2220 Male, age 76, midline 67.5
Periaquaductal grey, anterior
nTPM: 59.6
1947 Male, age 18, unknown 63.0
1795 Male, age 51, unknown 62.0
2502 Female, age 75, unknown 54.0
Periaquaductal grey, dorsal
nTPM: 53.2
1831 Male, age 72, unknown 55.1
2850 Male, age 76, both hemispheres 54.1
2464 Female, age 72, unknown 54.0
1840 Male, age 53, unknown 49.5
Periaquaductal grey, lateral
nTPM: 60.5
2272 Male, age 74, both hemispheres 62.6
2140 Male, age 76, both hemispheres 60.9
2053 Male, age 18, unknown 58.0
Pretectal area
nTPM: 62.9
2407 Male, age 75, both hemispheres 72.2
2007 Male, age 72, unknown 69.5
1815 Male, age 53, unknown 69.4
1817 Female, age 42, unknown 66.9
1816 Male, age 51, unknown 64.6
2825 Male, age 18, unknown 62.2
1944 Female, age 72, unknown 59.0
2273 Male, age 74, both hemispheres 58.5
2316 Male, age 76, right hemisphere 58.0
2224 Female, age 72, unknown 56.7
2667 Female, age 75, unknown 54.9
Red nucleus
nTPM: 67.8
2584 Male, age 75, left hemisphere 78.2
2588 Male, age 74, left hemisphere 76.9
2785 Male, age 18, unknown 71.9
1821 Female, age 72, unknown 68.9
1865 Male, age 51, unknown 67.8
1904 Male, age 53, unknown 67.0
2725 Female, age 75, unknown 66.1
2823 Male, age 76, right hemisphere 65.0
2227 Male, age 72, unknown 64.8
2769 Male, age 72, unknown 64.1
1954 Female, age 42, unknown 62.0
2503 Female, age 72, unknown 60.8
Substantia nigra
nTPM: 64.8
2583 Male, age 75, right hemisphere 74.8
2409 Female, age 72, unknown 70.1
1851 Male, age 51, unknown 68.8
1941 Male, age 53, unknown 67.3
2590 Female, age 75, unknown 65.5
2241 Male, age 72, unknown 65.2
1916 Female, age 42, unknown 64.1
1889 Female, age 72, unknown 59.5
2665 Male, age 74, both hemispheres 57.7
2699 Male, age 18, unknown 55.3
Superior colliculus
nTPM: 62.7
2668 Female, age 75, unknown 79.1
1913 Female, age 42, unknown 70.6
2587 Male, age 74, left hemisphere 66.0
2261 Male, age 18, unknown 64.9
1796 Male, age 53, unknown 62.2
1995 Male, age 72, unknown 58.4
1839 Male, age 51, unknown 57.3
1895 Male, age 76, right hemisphere 57.1
2664 Male, age 75, both hemispheres 56.1
2087 Female, age 72, unknown 55.6
Ventral tegmental area
nTPM: 64.2
2223 Female, age 72, unknown 68.7
2410 Female, age 72, unknown 67.9
2218 Male, age 76, both hemispheres 64.4
1915 Female, age 42, unknown 63.0
2021 Male, age 53, unknown 62.2
1942 Male, age 51, unknown 59.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 28.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 28.9
Samples: 139

Max nTPM: 52.9
Min nTPM: 18.4
Std nTPM: 6.1
Median nTPM: 27.6
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 52.9
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 48.3
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 45.5
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 44.5
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 43.9
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 43.3
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 42.7
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 42.5
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 41.5
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 40.4
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 38.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 132.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 132.9
FF:10158-103A5 76 years, female 132.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 33.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 31.1
Samples: 4

Max nTPM: 34.9
Min nTPM: 27.6
Sample A Female 34.9
Sample B Female 27.6
Sample C Male 32.0
Sample D Male 29.7
Midbrain
nTPM: 32.3
Samples: 4

Max nTPM: 36.1
Min nTPM: 29.1
Sample A Female 32.9
Sample B Female 29.1
Sample C Male 36.1
Sample D Male 31.0
Periaqueductal gray
nTPM: 27.7
Samples: 3

Max nTPM: 28.7
Min nTPM: 26.4
Sample B Female 28.1
Sample C Male 28.7
Sample D Male 26.4
Superior colliculi
nTPM: 33.6
Samples: 4

Max nTPM: 35.1
Min nTPM: 32.6
Sample A Female 32.6
Sample B Female 33.5
Sample C Male 35.1
Sample D Male 33.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 44.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 44.7
Samples: 4

Max nTPM: 46.5
Min nTPM: 44.0
Sample A Male 44.0
Sample B Male 44.1
Sample C Female 46.5
Sample D Female 44.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 3.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.0
69013708 Antisense, RP_050309_02_G12, Mouse strain C57BL/6J (56 days, male) 3.0

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