MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:25.5 nTPM
HPA Brain:25.6 nTPM
GTEx:25.5 nTPM
FANTOM5:47.0 Scaled Tags Per Million
Mouse:52.1 nTPM
Allen mouse:4.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 25.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 22.2
2411 Female, age 72, unknown 28.7
1870 Female, age 42, unknown 25.0
2019 Male, age 18, unknown 24.5
2219 Male, age 76, both hemispheres 23.6
1830 Male, age 51, unknown 23.3
1833 Male, age 53, unknown 23.2
1827 Male, age 72, unknown 21.3
2828 Female, age 72, unknown 18.6
2666 Male, age 74, left hemisphere 17.3
2586 Male, age 75, left hemisphere 16.2
Dorsal raphe nucleus
nTPM: 25.6
2298 Female, age 72, unknown 29.2
2047 Male, age 72, unknown 25.1
2750 Male, age 76, both hemispheres 25.1
1828 Male, age 53, unknown 24.4
2016 Female, age 72, unknown 24.2
Inferior colliculus
nTPM: 24.5
2097 Female, age 72, unknown 27.3
1848 Female, age 42, unknown 25.9
1890 Male, age 53, unknown 23.4
2849 Male, age 72, unknown 21.5
Median raphe nucleus
nTPM: 25.5
2220 Male, age 76, midline 25.5
Periaquaductal grey, anterior
nTPM: 24.4
2502 Female, age 75, unknown 25.8
1947 Male, age 18, unknown 24.7
1795 Male, age 51, unknown 22.7
Periaquaductal grey, dorsal
nTPM: 23.6
1840 Male, age 53, unknown 26.0
2464 Female, age 72, unknown 23.8
2850 Male, age 76, both hemispheres 22.6
1831 Male, age 72, unknown 22.0
Periaquaductal grey, lateral
nTPM: 23.2
2272 Male, age 74, both hemispheres 24.8
2053 Male, age 18, unknown 23.1
2140 Male, age 76, both hemispheres 21.7
Pretectal area
nTPM: 24.4
2273 Male, age 74, both hemispheres 28.4
2224 Female, age 72, unknown 26.3
2316 Male, age 76, right hemisphere 25.7
1817 Female, age 42, unknown 24.4
1816 Male, age 51, unknown 24.2
2007 Male, age 72, unknown 24.0
1944 Female, age 72, unknown 23.8
2667 Female, age 75, unknown 23.8
1815 Male, age 53, unknown 23.2
2407 Male, age 75, both hemispheres 22.4
2825 Male, age 18, unknown 21.8
Red nucleus
nTPM: 22.8
1821 Female, age 72, unknown 29.1
1954 Female, age 42, unknown 24.9
2503 Female, age 72, unknown 23.8
1904 Male, age 53, unknown 23.2
1865 Male, age 51, unknown 23.0
2823 Male, age 76, right hemisphere 22.9
2769 Male, age 72, unknown 22.8
2725 Female, age 75, unknown 22.5
2227 Male, age 72, unknown 22.4
2785 Male, age 18, unknown 22.4
2588 Male, age 74, left hemisphere 19.8
2584 Male, age 75, left hemisphere 17.1
Substantia nigra
nTPM: 24.2
2241 Male, age 72, unknown 33.2
1916 Female, age 42, unknown 25.9
1851 Male, age 51, unknown 25.4
1941 Male, age 53, unknown 24.8
1889 Female, age 72, unknown 24.3
2409 Female, age 72, unknown 23.7
2699 Male, age 18, unknown 23.0
2590 Female, age 75, unknown 22.7
2583 Male, age 75, right hemisphere 21.3
2665 Male, age 74, both hemispheres 17.4
Superior colliculus
nTPM: 22.2
2587 Male, age 74, left hemisphere 26.4
1895 Male, age 76, right hemisphere 24.7
2261 Male, age 18, unknown 22.9
1839 Male, age 51, unknown 22.5
2668 Female, age 75, unknown 22.5
2087 Female, age 72, unknown 22.3
1913 Female, age 42, unknown 21.3
1796 Male, age 53, unknown 21.1
1995 Male, age 72, unknown 20.4
2664 Male, age 75, both hemispheres 17.6
Ventral tegmental area
nTPM: 23.8
2410 Female, age 72, unknown 26.4
2218 Male, age 76, both hemispheres 24.8
1915 Female, age 42, unknown 23.5
2223 Female, age 72, unknown 23.5
2021 Male, age 53, unknown 22.8
1942 Male, age 51, unknown 22.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 25.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 25.5
Samples: 139

Max nTPM: 66.6
Min nTPM: 16.2
Std nTPM: 5.3
Median nTPM: 24.6
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 66.6
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 38.6
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 37.3
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 36.1
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 35.9
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 34.2
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 33.6
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 32.8
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 32.4
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 32.2
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 32.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 47.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 47.0
FF:10158-103A5 76 years, female 47.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 52.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 52.1
Samples: 4

Max nTPM: 53.8
Min nTPM: 50.7
Sample A Male 52.5
Sample B Male 53.8
Sample C Female 51.3
Sample D Female 50.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 4.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.1
76098392 Antisense, RP_060626_01_G05, Mouse strain C57BL/6J (56 days, male) 4.1

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