MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:98.2 nTPM
HPA Brain:97.2 nTPM
GTEx:98.2 nTPM
FANTOM5:131.4 Scaled Tags Per Million
Pig:0.1 nTPM
Mouse:60.3 nTPM
Allen mouse:1.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 97.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 85.5
2586 Male, age 75, left hemisphere 112.7
1827 Male, age 72, unknown 91.2
2666 Male, age 74, left hemisphere 89.3
1870 Female, age 42, unknown 88.0
2019 Male, age 18, unknown 82.1
2828 Female, age 72, unknown 81.8
1833 Male, age 53, unknown 79.6
2411 Female, age 72, unknown 77.8
1830 Male, age 51, unknown 76.6
2219 Male, age 76, both hemispheres 76.1
Dorsal raphe nucleus
nTPM: 89.5
2047 Male, age 72, unknown 98.2
2298 Female, age 72, unknown 90.5
2750 Male, age 76, both hemispheres 89.7
1828 Male, age 53, unknown 86.2
2016 Female, age 72, unknown 83.0
Inferior colliculus
nTPM: 86.7
1848 Female, age 42, unknown 88.1
2849 Male, age 72, unknown 88.0
1890 Male, age 53, unknown 85.5
2097 Female, age 72, unknown 85.1
Median raphe nucleus
nTPM: 97.2
2220 Male, age 76, midline 97.2
Periaquaductal grey, anterior
nTPM: 94.4
1947 Male, age 18, unknown 103.0
2502 Female, age 75, unknown 90.5
1795 Male, age 51, unknown 89.7
Periaquaductal grey, dorsal
nTPM: 80.0
1840 Male, age 53, unknown 90.9
2850 Male, age 76, both hemispheres 85.3
1831 Male, age 72, unknown 75.4
2464 Female, age 72, unknown 68.4
Periaquaductal grey, lateral
nTPM: 81.1
2140 Male, age 76, both hemispheres 86.3
2272 Male, age 74, both hemispheres 81.8
2053 Male, age 18, unknown 75.3
Pretectal area
nTPM: 86.8
2007 Male, age 72, unknown 101.3
1816 Male, age 51, unknown 98.1
1817 Female, age 42, unknown 97.1
1944 Female, age 72, unknown 89.6
1815 Male, age 53, unknown 86.3
2224 Female, age 72, unknown 83.9
2825 Male, age 18, unknown 83.0
2407 Male, age 75, both hemispheres 82.6
2667 Female, age 75, unknown 80.6
2273 Male, age 74, both hemispheres 78.1
2316 Male, age 76, right hemisphere 74.2
Red nucleus
nTPM: 79.9
2584 Male, age 75, left hemisphere 90.6
2588 Male, age 74, left hemisphere 88.7
2785 Male, age 18, unknown 86.0
1821 Female, age 72, unknown 85.5
2725 Female, age 75, unknown 83.5
2227 Male, age 72, unknown 78.3
2769 Male, age 72, unknown 77.1
1954 Female, age 42, unknown 76.1
2503 Female, age 72, unknown 76.1
2823 Male, age 76, right hemisphere 72.7
1904 Male, age 53, unknown 72.6
1865 Male, age 51, unknown 71.7
Substantia nigra
nTPM: 94.1
1916 Female, age 42, unknown 117.8
2665 Male, age 74, both hemispheres 103.1
1941 Male, age 53, unknown 100.0
1851 Male, age 51, unknown 97.6
1889 Female, age 72, unknown 91.0
2241 Male, age 72, unknown 90.7
2583 Male, age 75, right hemisphere 90.2
2699 Male, age 18, unknown 88.7
2590 Female, age 75, unknown 83.7
2409 Female, age 72, unknown 77.9
Superior colliculus
nTPM: 82.4
2668 Female, age 75, unknown 97.4
2664 Male, age 75, both hemispheres 89.1
1796 Male, age 53, unknown 87.9
1839 Male, age 51, unknown 86.3
2261 Male, age 18, unknown 84.8
1895 Male, age 76, right hemisphere 79.9
2087 Female, age 72, unknown 79.9
2587 Male, age 74, left hemisphere 79.2
1913 Female, age 42, unknown 72.5
1995 Male, age 72, unknown 66.7
Ventral tegmental area
nTPM: 89.2
1915 Female, age 42, unknown 98.0
2218 Male, age 76, both hemispheres 92.5
1942 Male, age 51, unknown 92.3
2410 Female, age 72, unknown 85.2
2021 Male, age 53, unknown 83.8
2223 Female, age 72, unknown 83.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 98.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 98.2
Samples: 139

Max nTPM: 154.1
Min nTPM: 67.1
Std nTPM: 16.6
Median nTPM: 96.6
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 154.1
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 152.4
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 149.0
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 145.5
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 141.6
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 136.4
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 129.8
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 128.4
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 123.9
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 122.0
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 119.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 131.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 131.4
FF:10158-103A5 76 years, female 131.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 0.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 0.0
Samples: 4

Max nTPM: 0.0
Min nTPM: 0.0
Sample A Female 0.0
Sample B Female 0.0
Sample C Male 0.0
Sample D Male 0.0
Midbrain
nTPM: 0.0
Samples: 4

Max nTPM: 0.0
Min nTPM: 0.0
Sample A Female 0.0
Sample B Female 0.0
Sample C Male 0.0
Sample D Male 0.0
Periaqueductal gray
nTPM: 0.1
Samples: 3

Max nTPM: 0.2
Min nTPM: 0.0
Sample B Female 0.2
Sample C Male 0.0
Sample D Male 0.1
Superior colliculi
nTPM: 0.0
Samples: 4

Max nTPM: 0.1
Min nTPM: 0.0
Sample A Female 0.0
Sample B Female 0.0
Sample C Male 0.1
Sample D Male 0.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 60.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 60.3
Samples: 4

Max nTPM: 67.8
Min nTPM: 56.7
Sample A Male 67.8
Sample B Male 58.9
Sample C Female 56.7
Sample D Female 57.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.8
70474827 Antisense, RP_050623_01_B01, Mouse strain C57BL/6J (56 days, male) 1.8

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