HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: High
Neuronal cells: High
Mouse brain, Intensity
Hippocampal formationi 		98.862
RNA expressioni
Consensus:1206.2 nTPM
HPA Brain:393.3 nTPM
GTEx:1206.2 nTPM
FANTOM5:495.8 Scaled Tags Per Million
Pig:1408.8 nTPM
Mouse:158.7 nTPM
Allen mouse:1.2 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA015768Antibody CAB000073Antibody CAB078196
Glial cells HighHighHigh
Neuronal cells MediumLowHigh







HIPPOCAMPAL FORMATION - Mouse brain profilei , antibody CAB000073
Hippocampal formation mean intensity 98.862
intensityi
FRONT BACK
Polymorph layer of the dentate gyrus 28.598
Molecular layer of the dentate gyrus 52.224
Granular dentate gyrus 5.280
CA1 - oriens layer 58.172
CA1 - pyramidal layer 22.006
CA1 - radiatum layer 37.693
CA2 - oriens layer 93.059
CA2 - pyramidal layer 54.439
CA2 - radiatum layer 65.835
CA3 - oriens layer 62.433
CA3 - pyramidal layer 40.857
CA3 - radiatum layer 53.670
Stratum lucidum 53.473
Lacunosum moleculare 9.679
Subiculum 39.809

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 393.3
Sample id Sample description nTPM
Hippocampus
nTPM: 393.3
1911 Female, age 85, right hemisphere 447.7
2529 Female, age 94, left hemisphere 430.1
1898 Male, age 80, left hemisphere 429.5
1855 Male, age 76, left hemisphere 383.2
2148 Female, age 91, left hemisphere 368.0
2621 Female, age 67, right hemisphere 301.2
Dentate gyrus
nTPM: 334.7
2530 Female, age 94, left hemisphere 481.8
2010 Male, age 76, both hemispheres 398.4
2528 Male, age 74, both hemispheres 385.5
2246 Female, age 85, both hemispheres 309.8
1927 Female, age 91, both hemispheres 227.1
2531 Female, age 67, both hemispheres 205.9
Entorhinal gyrus
nTPM: 245.0
2117 Female, age 91, right hemisphere 418.7
1938 Female, age 85, left hemisphere 255.6
2686 Male, age 75, right hemisphere 251.0
2764 Male, age 80, right hemisphere 218.6
1787 Male, age 76, left hemisphere 192.7
2613 Female, age 94, left hemisphere 133.1
Hippocampus, CA1
nTPM: 279.6
1873 Female, age 85, both hemispheres 393.3
2527 Male, age 74, both hemispheres 307.2
2082 Female, age 91, right hemisphere 271.8
2045 Male, age 76, both hemispheres 241.9
2749 Male, age 80, left hemisphere 183.6
Hippocampus, CA2
nTPM: 301.7
2249 Male, age 74, both hemispheres 404.3
2113 Female, age 91, right hemisphere 331.8
2437 Female, age 94, left hemisphere 316.6
1963 Male, age 80, left hemisphere 303.1
1940 Female, age 85, left hemisphere 253.8
1892 Male, age 76, both hemispheres 200.6
Hippocampus, CA3
nTPM: 259.1
1891 Female, age 85, both hemispheres 393.9
2436 Male, age 74, both hemispheres 284.1
1867 Male, age 76, both hemispheres 283.6
2620 Female, age 94, left hemisphere 222.9
2137 Male, age 80, left hemisphere 202.6
2861 Female, age 67, both hemispheres 167.8
Parahippocampal cortex
nTPM: 227.8
2245 Female, age 91, both hemispheres 293.4
2692 Male, age 74, both hemispheres 282.4
2018 Male, age 76, both hemispheres 280.2
2532 Female, age 72, left hemisphere 258.1
1933 Female, age 85, both hemispheres 251.0
1990 Female, age 91, right hemisphere 221.2
1850 Male, age 80, both hemispheres 208.0
2250 Female, age 67, right hemisphere 168.9
2622 Female, age 67, right hemisphere 161.1
2693 Female, age 94, both hemispheres 154.0
Perirhinal gyrus
nTPM: 178.1
1794 Male, age 80, right hemisphere 188.2
1847 Female, age 91, left hemisphere 188.0
2521 Female, age 94, right hemisphere 183.3
1841 Female, age 85, right hemisphere 182.7
2848 Male, age 76, right hemisphere 148.2
Subiculum
nTPM: 373.7
2042 Male, age 76, both hemispheres 536.2
2729 Female, age 91, right hemisphere 418.6
1901 Male, age 80, both hemispheres 362.0
2438 Female, age 94, left hemisphere 358.9
2619 Male, age 74, both hemispheres 293.3
1977 Female, age 85, both hemispheres 273.4

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 1206.2
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 1206.2
Samples: 197

Max nTPM: 3159.1
Min nTPM: 139.1
Std nTPM: 512.9
Median nTPM: 1186.0
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 3159.1
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 3111.8
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 2835.5
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 2803.8
GTEX-1HR98-0011-R1a-SM-ARZLQ 60-69 years, male 2700.7
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 2583.3
GTEX-13OVL-0011-R1a-SM-5L3H5 50-59 years, male 2236.3
GTEX-13JVG-0011-R1a-SM-5KM32 60-69 years, male 2075.4
GTEX-1E1VI-0011-R1a-SM-ARZMM 50-59 years, male 2058.7
GTEX-13OW8-0011-R1a-SM-5L3HI 60-69 years, male 2036.0
GTEX-1BAJH-0011-R1a-SM-7P8SV 70-79 years, male 2030.2
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 495.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 495.8
FF:10169-103B7 60 years, female 570.1
FF:10153-102I9 76 years, female 421.5

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 1408.8
Pig sample Sample description nTPM
Subiculum
nTPM: 1276.2
Samples: 4

Max nTPM: 1723.2
Min nTPM: 1057.8
Sample A Female 1723.2
Sample B Female 1203.0
Sample C Male 1057.8
Sample D Male 1120.9
Dorsal hippocampus
nTPM: 1408.9
Samples: 4

Max nTPM: 2021.3
Min nTPM: 840.7
Sample A Female 2021.3
Sample B Female 1150.1
Sample C Male 1623.3
Sample D Male 840.7
Entorhinal cortex
nTPM: 1261.8
Samples: 4

Max nTPM: 1629.0
Min nTPM: 869.7
Sample A Female 1067.9
Sample B Female 1480.7
Sample C Male 1629.0
Sample D Male 869.7
Ventral hippocampus
nTPM: 1402.8
Samples: 4

Max nTPM: 1635.8
Min nTPM: 1135.1
Sample A Female 1635.8
Sample B Female 1244.3
Sample C Male 1595.9
Sample D Male 1135.1

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 158.7
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 157.0
Samples: 4

Max nTPM: 182.5
Min nTPM: 137.8
Sample A Male 161.5
Sample B Male 146.0
Sample C Female 182.5
Sample D Female 137.8
Hippocampal formation
nTPM: 158.7
Samples: 4

Max nTPM: 189.9
Min nTPM: 144.7
Sample A Male 189.9
Sample B Male 148.7
Sample C Female 144.7
Sample D Female 151.5

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 1.2
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 1.2
79591593 Antisense, RP_071204_04_D04, Mouse strain C57BL/6J (56 days, male) 1.2
79762548 Antisense, RP_071204_04_D04, Mouse strain C57BL/6J (56 days, male) 0.4

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