MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:2756.6 nTPM
HPA Brain:804.2 nTPM
GTEx:2756.6 nTPM
FANTOM5:1397.3 Scaled Tags Per Million
Pig:2215.1 nTPM
Mouse:358.8 nTPM
Allen mouse:3.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 804.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 563.6
1870 Female, age 42, unknown 746.9
2411 Female, age 72, unknown 737.7
2019 Male, age 18, unknown 718.0
1830 Male, age 51, unknown 679.3
1833 Male, age 53, unknown 641.0
2828 Female, age 72, unknown 583.2
2666 Male, age 74, left hemisphere 408.0
1827 Male, age 72, unknown 386.6
2219 Male, age 76, both hemispheres 368.9
2586 Male, age 75, left hemisphere 366.2
Dorsal raphe nucleus
nTPM: 593.9
2750 Male, age 76, both hemispheres 882.1
1828 Male, age 53, unknown 595.9
2016 Female, age 72, unknown 576.7
2298 Female, age 72, unknown 462.2
2047 Male, age 72, unknown 452.7
Inferior colliculus
nTPM: 423.3
1848 Female, age 42, unknown 461.0
1890 Male, age 53, unknown 442.4
2849 Male, age 72, unknown 396.9
2097 Female, age 72, unknown 392.7
Median raphe nucleus
nTPM: 775.0
2220 Male, age 76, midline 775.0
Periaquaductal grey, anterior
nTPM: 356.8
1795 Male, age 51, unknown 379.1
2502 Female, age 75, unknown 357.3
1947 Male, age 18, unknown 333.8
Periaquaductal grey, dorsal
nTPM: 478.5
1831 Male, age 72, unknown 592.0
2850 Male, age 76, both hemispheres 532.8
2464 Female, age 72, unknown 425.3
1840 Male, age 53, unknown 364.0
Periaquaductal grey, lateral
nTPM: 477.1
2053 Male, age 18, unknown 576.6
2272 Male, age 74, both hemispheres 438.5
2140 Male, age 76, both hemispheres 416.3
Pretectal area
nTPM: 446.6
2273 Male, age 74, both hemispheres 600.3
1815 Male, age 53, unknown 557.6
1817 Female, age 42, unknown 483.3
2316 Male, age 76, right hemisphere 482.6
2224 Female, age 72, unknown 465.2
2667 Female, age 75, unknown 454.4
2407 Male, age 75, both hemispheres 434.1
2825 Male, age 18, unknown 426.7
1944 Female, age 72, unknown 354.0
2007 Male, age 72, unknown 349.5
1816 Male, age 51, unknown 305.3
Red nucleus
nTPM: 804.2
1821 Female, age 72, unknown 1056.0
1865 Male, age 51, unknown 1030.1
1904 Male, age 53, unknown 944.2
2823 Male, age 76, right hemisphere 881.0
1954 Female, age 42, unknown 879.5
2503 Female, age 72, unknown 878.3
2769 Male, age 72, unknown 860.8
2227 Male, age 72, unknown 859.0
2785 Male, age 18, unknown 727.5
2588 Male, age 74, left hemisphere 573.9
2725 Female, age 75, unknown 517.6
2584 Male, age 75, left hemisphere 441.9
Substantia nigra
nTPM: 576.4
2699 Male, age 18, unknown 674.3
2409 Female, age 72, unknown 669.7
1851 Male, age 51, unknown 656.6
2590 Female, age 75, unknown 620.2
1889 Female, age 72, unknown 582.9
2665 Male, age 74, both hemispheres 545.8
1916 Female, age 42, unknown 516.9
1941 Male, age 53, unknown 508.7
2241 Male, age 72, unknown 498.0
2583 Male, age 75, right hemisphere 491.3
Superior colliculus
nTPM: 552.4
1995 Male, age 72, unknown 918.3
1913 Female, age 42, unknown 869.6
2668 Female, age 75, unknown 690.6
2587 Male, age 74, left hemisphere 673.1
1839 Male, age 51, unknown 433.4
2087 Female, age 72, unknown 429.1
1796 Male, age 53, unknown 426.7
2664 Male, age 75, both hemispheres 392.1
1895 Male, age 76, right hemisphere 373.5
2261 Male, age 18, unknown 317.6
Ventral tegmental area
nTPM: 761.4
2223 Female, age 72, unknown 1279.0
2410 Female, age 72, unknown 776.3
2218 Male, age 76, both hemispheres 657.5
2021 Male, age 53, unknown 650.8
1942 Male, age 51, unknown 618.3
1915 Female, age 42, unknown 586.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 2756.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 2756.6
Samples: 139

Max nTPM: 8534.8
Min nTPM: 555.1
Std nTPM: 1233.2
Median nTPM: 2548.6
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 8534.8
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 6328.2
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 5714.8
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 5616.2
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 5398.5
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 5340.8
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 5256.8
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 5049.3
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 5040.7
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 5000.2
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 4953.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 1397.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 1397.3
FF:10158-103A5 76 years, female 1397.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 2215.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 2179.5
Samples: 4

Max nTPM: 2967.7
Min nTPM: 1773.0
Sample A Female 2967.7
Sample B Female 1773.0
Sample C Male 1883.1
Sample D Male 2094.1
Midbrain
nTPM: 2215.1
Samples: 4

Max nTPM: 4591.3
Min nTPM: 1013.0
Sample A Female 4591.3
Sample B Female 1980.6
Sample C Male 1275.6
Sample D Male 1013.0
Periaqueductal gray
nTPM: 1712.7
Samples: 3

Max nTPM: 1760.9
Min nTPM: 1623.0
Sample B Female 1754.2
Sample C Male 1760.9
Sample D Male 1623.0
Superior colliculi
nTPM: 1550.9
Samples: 4

Max nTPM: 2119.0
Min nTPM: 946.1
Sample A Female 2119.0
Sample B Female 946.1
Sample C Male 1605.0
Sample D Male 1533.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 358.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 358.8
Samples: 4

Max nTPM: 378.8
Min nTPM: 322.8
Sample A Male 378.8
Sample B Male 357.0
Sample C Female 322.8
Sample D Female 376.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 3.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.4
79591593 Antisense, RP_071204_04_D04, Mouse strain C57BL/6J (56 days, male) 3.4
79762548 Antisense, RP_071204_04_D04, Mouse strain C57BL/6J (56 days, male) 1.5

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