MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:22.3 nTPM
HPA Brain:45.2 nTPM
GTEx:22.3 nTPM
FANTOM5:29.6 Scaled Tags Per Million
Pig:26.0 nTPM
Mouse:8.9 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 45.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 45.2
2586 Male, age 75, left hemisphere 60.8
2666 Male, age 74, left hemisphere 51.0
2019 Male, age 18, unknown 48.0
2828 Female, age 72, unknown 47.6
1830 Male, age 51, unknown 45.9
1833 Male, age 53, unknown 44.1
1827 Male, age 72, unknown 41.5
2411 Female, age 72, unknown 38.5
1870 Female, age 42, unknown 38.4
2219 Male, age 76, both hemispheres 36.5
Dorsal raphe nucleus
nTPM: 41.9
2047 Male, age 72, unknown 49.3
1828 Male, age 53, unknown 43.3
2750 Male, age 76, both hemispheres 41.0
2298 Female, age 72, unknown 40.5
2016 Female, age 72, unknown 35.5
Inferior colliculus
nTPM: 37.3
1890 Male, age 53, unknown 40.0
1848 Female, age 42, unknown 38.8
2849 Male, age 72, unknown 36.3
2097 Female, age 72, unknown 34.0
Median raphe nucleus
nTPM: 43.6
2220 Male, age 76, midline 43.6
Periaquaductal grey, anterior
nTPM: 45.0
1795 Male, age 51, unknown 47.8
1947 Male, age 18, unknown 44.7
2502 Female, age 75, unknown 42.3
Periaquaductal grey, dorsal
nTPM: 40.8
2850 Male, age 76, both hemispheres 45.6
1831 Male, age 72, unknown 43.5
2464 Female, age 72, unknown 40.2
1840 Male, age 53, unknown 34.0
Periaquaductal grey, lateral
nTPM: 44.1
2140 Male, age 76, both hemispheres 51.9
2272 Male, age 74, both hemispheres 42.0
2053 Male, age 18, unknown 38.5
Pretectal area
nTPM: 43.0
1817 Female, age 42, unknown 50.7
2007 Male, age 72, unknown 47.5
1816 Male, age 51, unknown 46.9
2316 Male, age 76, right hemisphere 45.4
1815 Male, age 53, unknown 45.2
2667 Female, age 75, unknown 44.7
1944 Female, age 72, unknown 40.8
2407 Male, age 75, both hemispheres 40.6
2825 Male, age 18, unknown 37.8
2224 Female, age 72, unknown 37.7
2273 Male, age 74, both hemispheres 35.2
Red nucleus
nTPM: 45.2
2823 Male, age 76, right hemisphere 52.1
2584 Male, age 75, left hemisphere 51.1
2725 Female, age 75, unknown 50.6
2785 Male, age 18, unknown 47.5
1904 Male, age 53, unknown 45.6
2227 Male, age 72, unknown 45.4
2769 Male, age 72, unknown 44.8
2588 Male, age 74, left hemisphere 44.6
1954 Female, age 42, unknown 42.3
1821 Female, age 72, unknown 42.2
1865 Male, age 51, unknown 40.4
2503 Female, age 72, unknown 35.7
Substantia nigra
nTPM: 43.7
2409 Female, age 72, unknown 55.7
2665 Male, age 74, both hemispheres 53.8
1851 Male, age 51, unknown 47.6
2699 Male, age 18, unknown 43.6
1889 Female, age 72, unknown 41.8
2583 Male, age 75, right hemisphere 41.3
1941 Male, age 53, unknown 40.8
1916 Female, age 42, unknown 39.3
2590 Female, age 75, unknown 38.0
2241 Male, age 72, unknown 35.1
Superior colliculus
nTPM: 42.1
2261 Male, age 18, unknown 47.4
1796 Male, age 53, unknown 45.9
2664 Male, age 75, both hemispheres 44.3
1913 Female, age 42, unknown 43.1
2668 Female, age 75, unknown 43.1
2087 Female, age 72, unknown 43.0
1995 Male, age 72, unknown 40.2
1895 Male, age 76, right hemisphere 39.9
1839 Male, age 51, unknown 37.8
2587 Male, age 74, left hemisphere 36.5
Ventral tegmental area
nTPM: 42.9
2223 Female, age 72, unknown 50.5
2218 Male, age 76, both hemispheres 44.5
2410 Female, age 72, unknown 42.7
2021 Male, age 53, unknown 41.8
1942 Male, age 51, unknown 40.0
1915 Female, age 42, unknown 37.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 22.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 22.3
Samples: 139

Max nTPM: 67.0
Min nTPM: 9.0
Std nTPM: 11.7
Median nTPM: 18.3
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 67.0
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 65.8
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 61.8
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 57.2
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 56.8
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 56.1
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 53.1
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 48.7
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 48.4
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 43.7
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 43.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 29.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 29.6
FF:10158-103A5 76 years, female 29.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 26.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 17.4
Samples: 4

Max nTPM: 25.7
Min nTPM: 14.0
Sample A Female 15.6
Sample B Female 25.7
Sample C Male 14.0
Sample D Male 14.3
Midbrain
nTPM: 12.8
Samples: 4

Max nTPM: 15.4
Min nTPM: 9.9
Sample A Female 15.4
Sample B Female 12.0
Sample C Male 13.7
Sample D Male 9.9
Periaqueductal gray
nTPM: 9.7
Samples: 3

Max nTPM: 10.4
Min nTPM: 9.2
Sample B Female 9.2
Sample C Male 10.4
Sample D Male 9.6
Superior colliculi
nTPM: 26.0
Samples: 4

Max nTPM: 55.0
Min nTPM: 12.5
Sample A Female 23.8
Sample B Female 55.0
Sample C Male 12.5
Sample D Male 12.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 8.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 8.9
Samples: 4

Max nTPM: 9.4
Min nTPM: 8.3
Sample A Male 9.1
Sample B Male 9.4
Sample C Female 8.3
Sample D Female 8.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
74431597 Antisense, RP_060207_02_B10, Mouse strain C57BL/6J (56 days, male) 0.0

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