MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:33.6 nTPM
HPA Brain:44.7 nTPM
GTEx:33.6 nTPM
FANTOM5:15.4 Scaled Tags Per Million
Pig:9.0 nTPM
Mouse:1.4 nTPM
Allen mouse:0.3 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 44.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 42.2
2219 Male, age 76, both hemispheres 114.5
2586 Male, age 75, left hemisphere 45.6
2666 Male, age 74, left hemisphere 39.9
2828 Female, age 72, unknown 37.2
1833 Male, age 53, unknown 35.3
2019 Male, age 18, unknown 34.4
1827 Male, age 72, unknown 31.9
1830 Male, age 51, unknown 28.2
1870 Female, age 42, unknown 28.2
2411 Female, age 72, unknown 27.3
Dorsal raphe nucleus
nTPM: 32.7
2298 Female, age 72, unknown 40.0
1828 Male, age 53, unknown 35.0
2047 Male, age 72, unknown 30.3
2016 Female, age 72, unknown 29.9
2750 Male, age 76, both hemispheres 28.4
Inferior colliculus
nTPM: 29.9
2097 Female, age 72, unknown 30.4
1848 Female, age 42, unknown 30.2
1890 Male, age 53, unknown 29.6
2849 Male, age 72, unknown 29.5
Median raphe nucleus
nTPM: 34.7
2220 Male, age 76, midline 34.7
Periaquaductal grey, anterior
nTPM: 44.7
1795 Male, age 51, unknown 55.7
2502 Female, age 75, unknown 39.9
1947 Male, age 18, unknown 38.5
Periaquaductal grey, dorsal
nTPM: 30.5
1831 Male, age 72, unknown 43.6
2464 Female, age 72, unknown 29.6
2850 Male, age 76, both hemispheres 27.8
1840 Male, age 53, unknown 21.1
Periaquaductal grey, lateral
nTPM: 32.7
2272 Male, age 74, both hemispheres 34.9
2140 Male, age 76, both hemispheres 34.8
2053 Male, age 18, unknown 28.6
Pretectal area
nTPM: 29.1
2007 Male, age 72, unknown 33.9
2224 Female, age 72, unknown 32.0
1817 Female, age 42, unknown 31.0
2273 Male, age 74, both hemispheres 30.5
2825 Male, age 18, unknown 29.8
1815 Male, age 53, unknown 29.2
1816 Male, age 51, unknown 28.6
2316 Male, age 76, right hemisphere 28.5
2667 Female, age 75, unknown 26.8
1944 Female, age 72, unknown 26.5
2407 Male, age 75, both hemispheres 23.6
Red nucleus
nTPM: 34.4
1904 Male, age 53, unknown 48.8
2584 Male, age 75, left hemisphere 40.4
2785 Male, age 18, unknown 37.5
2227 Male, age 72, unknown 34.8
1821 Female, age 72, unknown 34.2
2769 Male, age 72, unknown 33.7
2725 Female, age 75, unknown 33.3
2588 Male, age 74, left hemisphere 32.6
2503 Female, age 72, unknown 32.3
1865 Male, age 51, unknown 30.3
1954 Female, age 42, unknown 29.9
2823 Male, age 76, right hemisphere 25.5
Substantia nigra
nTPM: 27.0
2583 Male, age 75, right hemisphere 33.5
2665 Male, age 74, both hemispheres 33.2
1851 Male, age 51, unknown 30.3
2699 Male, age 18, unknown 30.3
1941 Male, age 53, unknown 29.5
2590 Female, age 75, unknown 26.3
1889 Female, age 72, unknown 26.1
1916 Female, age 42, unknown 24.4
2409 Female, age 72, unknown 19.1
2241 Male, age 72, unknown 17.6
Superior colliculus
nTPM: 30.5
2668 Female, age 75, unknown 37.2
2261 Male, age 18, unknown 33.9
1995 Male, age 72, unknown 33.7
2664 Male, age 75, both hemispheres 32.0
2087 Female, age 72, unknown 31.4
1796 Male, age 53, unknown 31.2
1913 Female, age 42, unknown 29.4
1839 Male, age 51, unknown 29.0
2587 Male, age 74, left hemisphere 25.8
1895 Male, age 76, right hemisphere 21.8
Ventral tegmental area
nTPM: 28.3
2223 Female, age 72, unknown 33.4
1942 Male, age 51, unknown 31.3
2218 Male, age 76, both hemispheres 30.0
1915 Female, age 42, unknown 29.2
2021 Male, age 53, unknown 23.9
2410 Female, age 72, unknown 22.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 33.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 33.6
Samples: 139

Max nTPM: 107.5
Min nTPM: 10.8
Std nTPM: 17.3
Median nTPM: 29.6
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 107.5
GTEX-T2IS-0011-R2A-SM-32QPF 20-29 years, female 93.0
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 88.0
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 86.1
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 86.0
GTEX-14ASI-0011-R2b-SM-5YY9H 60-69 years, male 72.7
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 72.3
GTEX-145LS-0011-R2a-SM-5PNZI 60-69 years, female 67.1
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 63.3
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 63.2
GTEX-1EU9M-0011-R2b-SM-9QEH7 60-69 years, male 59.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 15.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 15.4
FF:10158-103A5 76 years, female 15.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 9.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 7.8
Samples: 4

Max nTPM: 10.6
Min nTPM: 6.5
Sample A Female 6.9
Sample B Female 10.6
Sample C Male 7.1
Sample D Male 6.5
Midbrain
nTPM: 6.5
Samples: 4

Max nTPM: 9.6
Min nTPM: 3.3
Sample A Female 9.5
Sample B Female 3.3
Sample C Male 9.6
Sample D Male 3.7
Periaqueductal gray
nTPM: 3.8
Samples: 3

Max nTPM: 5.2
Min nTPM: 2.8
Sample B Female 2.8
Sample C Male 5.2
Sample D Male 3.5
Superior colliculi
nTPM: 9.0
Samples: 4

Max nTPM: 11.8
Min nTPM: 6.6
Sample A Female 8.6
Sample B Female 11.8
Sample C Male 9.0
Sample D Male 6.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 1.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 1.4
Samples: 4

Max nTPM: 1.9
Min nTPM: 1.1
Sample A Male 1.9
Sample B Male 1.2
Sample C Female 1.1
Sample D Female 1.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.3
71836849 Antisense, RP_051017_02_C12, Mouse strain C57BL/6J (56 days, male) 0.6
68191408 Antisense, RP_041129_01_B04, Mouse strain C57BL/6J (56 days, male) 0.0

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