MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:563.4 nTPM
HPA Brain:235.2 nTPM
GTEx:563.4 nTPM
FANTOM5:176.7 Scaled Tags Per Million
Pig:0.0 nTPM
Mouse:473.1 nTPM
Allen mouse:12.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 235.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 189.5
2586 Male, age 75, left hemisphere 224.3
1870 Female, age 42, unknown 200.7
2828 Female, age 72, unknown 199.3
2019 Male, age 18, unknown 197.0
2666 Male, age 74, left hemisphere 192.9
1827 Male, age 72, unknown 189.4
2411 Female, age 72, unknown 184.7
2219 Male, age 76, both hemispheres 174.0
1830 Male, age 51, unknown 166.7
1833 Male, age 53, unknown 166.0
Dorsal raphe nucleus
nTPM: 203.7
2298 Female, age 72, unknown 242.1
2750 Male, age 76, both hemispheres 206.1
1828 Male, age 53, unknown 202.1
2016 Female, age 72, unknown 193.9
2047 Male, age 72, unknown 174.3
Inferior colliculus
nTPM: 188.3
2097 Female, age 72, unknown 209.1
1890 Male, age 53, unknown 205.1
1848 Female, age 42, unknown 178.0
2849 Male, age 72, unknown 160.9
Median raphe nucleus
nTPM: 201.1
2220 Male, age 76, midline 201.1
Periaquaductal grey, anterior
nTPM: 235.2
2502 Female, age 75, unknown 277.8
1795 Male, age 51, unknown 221.6
1947 Male, age 18, unknown 206.3
Periaquaductal grey, dorsal
nTPM: 181.0
1831 Male, age 72, unknown 196.5
1840 Male, age 53, unknown 193.4
2850 Male, age 76, both hemispheres 167.5
2464 Female, age 72, unknown 166.7
Periaquaductal grey, lateral
nTPM: 182.2
2272 Male, age 74, both hemispheres 194.2
2140 Male, age 76, both hemispheres 177.6
2053 Male, age 18, unknown 174.8
Pretectal area
nTPM: 192.1
2007 Male, age 72, unknown 229.7
1817 Female, age 42, unknown 219.4
2224 Female, age 72, unknown 213.0
1816 Male, age 51, unknown 212.8
2316 Male, age 76, right hemisphere 195.6
1944 Female, age 72, unknown 187.8
2273 Male, age 74, both hemispheres 186.3
1815 Male, age 53, unknown 183.0
2825 Male, age 18, unknown 171.8
2667 Female, age 75, unknown 159.5
2407 Male, age 75, both hemispheres 153.8
Red nucleus
nTPM: 210.5
2503 Female, age 72, unknown 297.0
2769 Male, age 72, unknown 227.3
2227 Male, age 72, unknown 225.4
2785 Male, age 18, unknown 225.1
1904 Male, age 53, unknown 214.2
1865 Male, age 51, unknown 213.0
1821 Female, age 72, unknown 211.1
2725 Female, age 75, unknown 200.5
2584 Male, age 75, left hemisphere 195.5
2588 Male, age 74, left hemisphere 182.8
1954 Female, age 42, unknown 180.8
2823 Male, age 76, right hemisphere 153.0
Substantia nigra
nTPM: 207.7
1851 Male, age 51, unknown 264.4
1916 Female, age 42, unknown 257.3
2699 Male, age 18, unknown 220.1
2665 Male, age 74, both hemispheres 211.1
1889 Female, age 72, unknown 207.5
1941 Male, age 53, unknown 195.8
2590 Female, age 75, unknown 194.1
2409 Female, age 72, unknown 180.0
2241 Male, age 72, unknown 175.8
2583 Male, age 75, right hemisphere 171.2
Superior colliculus
nTPM: 200.2
1796 Male, age 53, unknown 224.0
2668 Female, age 75, unknown 219.3
2587 Male, age 74, left hemisphere 218.5
2261 Male, age 18, unknown 215.1
1913 Female, age 42, unknown 214.6
1995 Male, age 72, unknown 201.6
2087 Female, age 72, unknown 200.3
2664 Male, age 75, both hemispheres 178.2
1895 Male, age 76, right hemisphere 168.8
1839 Male, age 51, unknown 161.7
Ventral tegmental area
nTPM: 214.6
1915 Female, age 42, unknown 240.2
2223 Female, age 72, unknown 229.9
1942 Male, age 51, unknown 213.5
2410 Female, age 72, unknown 211.5
2218 Male, age 76, both hemispheres 196.6
2021 Male, age 53, unknown 196.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 563.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 563.4
Samples: 139

Max nTPM: 1290.3
Min nTPM: 214.1
Std nTPM: 171.6
Median nTPM: 539.3
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 1290.3
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 1268.5
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 979.7
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 970.4
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 922.3
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 913.1
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 890.1
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 889.1
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 825.0
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 822.5
GTEX-T2IS-0011-R2A-SM-32QPF 20-29 years, female 790.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 176.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 176.7
FF:10158-103A5 76 years, female 176.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 0.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 0.0
Samples: 4

Max nTPM: 0.0
Min nTPM: 0.0
Sample A Female 0.0
Sample B Female 0.0
Sample C Male 0.0
Sample D Male 0.0
Midbrain
nTPM: 0.0
Samples: 4

Max nTPM: 0.0
Min nTPM: 0.0
Sample A Female 0.0
Sample B Female 0.0
Sample C Male 0.0
Sample D Male 0.0
Periaqueductal gray
nTPM: 0.0
Samples: 3

Max nTPM: 0.1
Min nTPM: 0.0
Sample B Female 0.0
Sample C Male 0.1
Sample D Male 0.0
Superior colliculi
nTPM: 0.0
Samples: 4

Max nTPM: 0.0
Min nTPM: 0.0
Sample A Female 0.0
Sample B Female 0.0
Sample C Male 0.0
Sample D Male 0.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 473.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 473.1
Samples: 4

Max nTPM: 532.3
Min nTPM: 422.1
Sample A Male 532.3
Sample B Male 459.7
Sample C Female 422.1
Sample D Female 478.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 12.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 12.7
69818338 Antisense, RP_050510_04_H06, Mouse strain C57BL/6J (56 days, male) 12.9
74749928 Antisense, RP_060220_04_F02, Mouse strain C57BL/6J (56 days, male) 12.6

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