MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:230.5 nTPM
HPA Brain:212.5 nTPM
GTEx:230.5 nTPM
FANTOM5:162.9 Scaled Tags Per Million
Pig:262.9 nTPM
Mouse:663.9 nTPM
Allen mouse:7.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 212.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 177.2
1827 Male, age 72, unknown 221.5
2666 Male, age 74, left hemisphere 215.4
2411 Female, age 72, unknown 182.4
2219 Male, age 76, both hemispheres 178.1
1870 Female, age 42, unknown 177.2
2586 Male, age 75, left hemisphere 177.1
2019 Male, age 18, unknown 176.1
2828 Female, age 72, unknown 172.7
1833 Male, age 53, unknown 142.3
1830 Male, age 51, unknown 129.3
Dorsal raphe nucleus
nTPM: 186.9
2298 Female, age 72, unknown 257.2
2047 Male, age 72, unknown 200.3
2750 Male, age 76, both hemispheres 176.5
1828 Male, age 53, unknown 174.1
2016 Female, age 72, unknown 126.5
Inferior colliculus
nTPM: 165.6
2097 Female, age 72, unknown 194.8
1848 Female, age 42, unknown 162.4
1890 Male, age 53, unknown 161.3
2849 Male, age 72, unknown 143.9
Median raphe nucleus
nTPM: 206.5
2220 Male, age 76, midline 206.5
Periaquaductal grey, anterior
nTPM: 200.5
1795 Male, age 51, unknown 227.9
1947 Male, age 18, unknown 208.8
2502 Female, age 75, unknown 164.9
Periaquaductal grey, dorsal
nTPM: 154.0
1840 Male, age 53, unknown 170.8
1831 Male, age 72, unknown 170.0
2850 Male, age 76, both hemispheres 141.1
2464 Female, age 72, unknown 134.2
Periaquaductal grey, lateral
nTPM: 146.9
2053 Male, age 18, unknown 160.1
2272 Male, age 74, both hemispheres 158.6
2140 Male, age 76, both hemispheres 122.1
Pretectal area
nTPM: 207.1
1816 Male, age 51, unknown 287.6
2007 Male, age 72, unknown 265.7
1944 Female, age 72, unknown 258.3
1817 Female, age 42, unknown 246.8
1815 Male, age 53, unknown 212.3
2667 Female, age 75, unknown 199.7
2224 Female, age 72, unknown 198.3
2273 Male, age 74, both hemispheres 170.7
2825 Male, age 18, unknown 157.0
2407 Male, age 75, both hemispheres 156.6
2316 Male, age 76, right hemisphere 125.5
Red nucleus
nTPM: 154.6
1821 Female, age 72, unknown 197.7
2725 Female, age 75, unknown 193.5
2785 Male, age 18, unknown 176.5
2503 Female, age 72, unknown 158.2
2584 Male, age 75, left hemisphere 150.1
2588 Male, age 74, left hemisphere 150.1
1954 Female, age 42, unknown 146.5
2769 Male, age 72, unknown 140.5
1904 Male, age 53, unknown 140.2
2227 Male, age 72, unknown 137.9
1865 Male, age 51, unknown 136.8
2823 Male, age 76, right hemisphere 127.8
Substantia nigra
nTPM: 212.5
1916 Female, age 42, unknown 292.8
1941 Male, age 53, unknown 251.6
1889 Female, age 72, unknown 243.5
1851 Male, age 51, unknown 243.1
2241 Male, age 72, unknown 200.9
2665 Male, age 74, both hemispheres 199.3
2409 Female, age 72, unknown 190.2
2583 Male, age 75, right hemisphere 170.1
2699 Male, age 18, unknown 166.8
2590 Female, age 75, unknown 166.5
Superior colliculus
nTPM: 172.9
1796 Male, age 53, unknown 219.8
2668 Female, age 75, unknown 204.9
2261 Male, age 18, unknown 204.1
2087 Female, age 72, unknown 200.4
2587 Male, age 74, left hemisphere 166.9
2664 Male, age 75, both hemispheres 154.7
1895 Male, age 76, right hemisphere 154.0
1839 Male, age 51, unknown 152.2
1913 Female, age 42, unknown 152.1
1995 Male, age 72, unknown 120.0
Ventral tegmental area
nTPM: 195.7
2218 Male, age 76, both hemispheres 230.5
2410 Female, age 72, unknown 228.4
1915 Female, age 42, unknown 226.3
1942 Male, age 51, unknown 171.0
2223 Female, age 72, unknown 167.1
2021 Male, age 53, unknown 151.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 230.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 230.5
Samples: 139

Max nTPM: 689.6
Min nTPM: 134.5
Std nTPM: 82.6
Median nTPM: 203.2
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 689.6
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 557.9
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 451.1
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 428.5
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 421.6
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 409.9
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 374.0
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 372.6
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 371.4
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 349.6
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 347.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 162.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 162.9
FF:10158-103A5 76 years, female 162.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 262.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 223.3
Samples: 4

Max nTPM: 300.0
Min nTPM: 146.4
Sample A Female 300.0
Sample B Female 179.6
Sample C Male 267.0
Sample D Male 146.4
Midbrain
nTPM: 250.1
Samples: 4

Max nTPM: 335.3
Min nTPM: 195.0
Sample A Female 227.5
Sample B Female 195.0
Sample C Male 335.3
Sample D Male 242.5
Periaqueductal gray
nTPM: 184.2
Samples: 3

Max nTPM: 221.7
Min nTPM: 155.3
Sample B Female 175.5
Sample C Male 221.7
Sample D Male 155.3
Superior colliculi
nTPM: 262.9
Samples: 4

Max nTPM: 324.4
Min nTPM: 209.6
Sample A Female 284.0
Sample B Female 209.6
Sample C Male 324.4
Sample D Male 233.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 663.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 663.9
Samples: 4

Max nTPM: 681.1
Min nTPM: 651.1
Sample A Male 657.3
Sample B Male 651.1
Sample C Female 666.2
Sample D Female 681.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 7.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 7.1
101 Antisense, RP_Baylor_102629, Mouse strain C57BL/6J (56 days, male) 7.1

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