MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:15.3 nTPM
HPA Brain:46.1 nTPM
GTEx:15.3 nTPM
FANTOM5:44.9 Scaled Tags Per Million
Pig:32.9 nTPM
Mouse:25.9 nTPM
Allen mouse:0.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 46.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 41.4
1870 Female, age 42, unknown 43.9
2666 Male, age 74, left hemisphere 42.8
2586 Male, age 75, left hemisphere 42.7
1827 Male, age 72, unknown 42.0
2828 Female, age 72, unknown 41.2
1833 Male, age 53, unknown 40.9
1830 Male, age 51, unknown 40.7
2019 Male, age 18, unknown 40.7
2411 Female, age 72, unknown 40.4
2219 Male, age 76, both hemispheres 39.0
Dorsal raphe nucleus
nTPM: 42.2
2047 Male, age 72, unknown 45.2
1828 Male, age 53, unknown 43.8
2298 Female, age 72, unknown 42.3
2016 Female, age 72, unknown 41.1
2750 Male, age 76, both hemispheres 38.8
Inferior colliculus
nTPM: 39.8
1848 Female, age 42, unknown 41.9
2849 Male, age 72, unknown 41.5
1890 Male, age 53, unknown 39.4
2097 Female, age 72, unknown 36.2
Median raphe nucleus
nTPM: 46.1
2220 Male, age 76, midline 46.1
Periaquaductal grey, anterior
nTPM: 40.5
1795 Male, age 51, unknown 42.0
1947 Male, age 18, unknown 40.1
2502 Female, age 75, unknown 39.4
Periaquaductal grey, dorsal
nTPM: 43.1
2850 Male, age 76, both hemispheres 48.4
1840 Male, age 53, unknown 42.4
1831 Male, age 72, unknown 41.0
2464 Female, age 72, unknown 40.5
Periaquaductal grey, lateral
nTPM: 42.6
2140 Male, age 76, both hemispheres 46.2
2272 Male, age 74, both hemispheres 41.3
2053 Male, age 18, unknown 40.4
Pretectal area
nTPM: 40.8
2273 Male, age 74, both hemispheres 45.0
1816 Male, age 51, unknown 42.8
1817 Female, age 42, unknown 41.8
1944 Female, age 72, unknown 41.3
2007 Male, age 72, unknown 40.5
2316 Male, age 76, right hemisphere 40.4
2667 Female, age 75, unknown 40.4
2224 Female, age 72, unknown 40.2
2407 Male, age 75, both hemispheres 40.0
1815 Male, age 53, unknown 38.5
2825 Male, age 18, unknown 38.1
Red nucleus
nTPM: 41.1
2785 Male, age 18, unknown 44.6
2725 Female, age 75, unknown 44.2
2584 Male, age 75, left hemisphere 43.7
2503 Female, age 72, unknown 41.5
1904 Male, age 53, unknown 41.2
2769 Male, age 72, unknown 41.2
1865 Male, age 51, unknown 40.4
1821 Female, age 72, unknown 40.2
2588 Male, age 74, left hemisphere 40.1
2823 Male, age 76, right hemisphere 39.9
2227 Male, age 72, unknown 39.4
1954 Female, age 42, unknown 36.8
Substantia nigra
nTPM: 43.3
1916 Female, age 42, unknown 46.5
2699 Male, age 18, unknown 46.0
2665 Male, age 74, both hemispheres 45.8
1941 Male, age 53, unknown 44.8
2590 Female, age 75, unknown 43.9
1889 Female, age 72, unknown 42.6
1851 Male, age 51, unknown 42.4
2241 Male, age 72, unknown 42.1
2583 Male, age 75, right hemisphere 41.6
2409 Female, age 72, unknown 37.4
Superior colliculus
nTPM: 40.2
2587 Male, age 74, left hemisphere 41.7
2664 Male, age 75, both hemispheres 41.4
1839 Male, age 51, unknown 41.3
2087 Female, age 72, unknown 41.2
1796 Male, age 53, unknown 40.6
2261 Male, age 18, unknown 40.3
1995 Male, age 72, unknown 39.6
1895 Male, age 76, right hemisphere 39.1
1913 Female, age 42, unknown 38.4
2668 Female, age 75, unknown 38.1
Ventral tegmental area
nTPM: 42.9
2218 Male, age 76, both hemispheres 44.8
2410 Female, age 72, unknown 44.2
1915 Female, age 42, unknown 43.6
2021 Male, age 53, unknown 43.0
2223 Female, age 72, unknown 41.5
1942 Male, age 51, unknown 40.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 15.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 15.3
Samples: 139

Max nTPM: 27.6
Min nTPM: 9.2
Std nTPM: 2.7
Median nTPM: 14.9
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 27.6
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 23.4
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 23.1
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 22.1
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 21.7
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 20.3
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 20.3
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 20.2
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 19.9
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 19.8
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 19.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 44.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 44.9
FF:10158-103A5 76 years, female 44.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 32.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 32.9
Samples: 4

Max nTPM: 38.9
Min nTPM: 28.0
Sample A Female 38.9
Sample B Female 28.3
Sample C Male 36.5
Sample D Male 28.0
Midbrain
nTPM: 31.5
Samples: 4

Max nTPM: 36.3
Min nTPM: 26.0
Sample A Female 35.0
Sample B Female 28.5
Sample C Male 36.3
Sample D Male 26.0
Periaqueductal gray
nTPM: 26.7
Samples: 3

Max nTPM: 29.8
Min nTPM: 23.2
Sample B Female 27.1
Sample C Male 29.8
Sample D Male 23.2
Superior colliculi
nTPM: 31.3
Samples: 4

Max nTPM: 34.3
Min nTPM: 28.8
Sample A Female 31.6
Sample B Female 28.8
Sample C Male 34.3
Sample D Male 30.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 25.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 25.9
Samples: 4

Max nTPM: 27.9
Min nTPM: 23.8
Sample A Male 23.8
Sample B Male 26.0
Sample C Female 27.9
Sample D Female 26.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.2
73731331 Antisense, RP_051212_01_D03, Mouse strain C57BL/6J (56 days, male) 0.2

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