HIPPOCAMPAL FORMATION - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:52.5 nTPM
HPA Brain:36.0 nTPM
GTEx:52.5 nTPM
FANTOM5:18.0 Scaled Tags Per Million
Pig:76.0 nTPM
Mouse:33.1 nTPM
Allen mouse:4.4 Expression energy

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 36.0
Sample id Sample description nTPM
Hippocampus
nTPM: 31.7
1898 Male, age 80, left hemisphere 38.9
1911 Female, age 85, right hemisphere 34.4
2529 Female, age 94, left hemisphere 32.5
1855 Male, age 76, left hemisphere 29.4
2148 Female, age 91, left hemisphere 28.4
2621 Female, age 67, right hemisphere 26.5
Dentate gyrus
nTPM: 31.1
2530 Female, age 94, left hemisphere 39.0
2010 Male, age 76, both hemispheres 36.3
2528 Male, age 74, both hemispheres 36.2
1927 Female, age 91, both hemispheres 27.5
2531 Female, age 67, both hemispheres 24.3
2246 Female, age 85, both hemispheres 23.1
Entorhinal gyrus
nTPM: 36.0
2117 Female, age 91, right hemisphere 46.9
2764 Male, age 80, right hemisphere 42.0
2613 Female, age 94, left hemisphere 34.2
1938 Female, age 85, left hemisphere 33.6
1787 Male, age 76, left hemisphere 30.4
2686 Male, age 75, right hemisphere 28.9
Hippocampus, CA1
nTPM: 29.8
2749 Male, age 80, left hemisphere 36.8
1873 Female, age 85, both hemispheres 30.4
2082 Female, age 91, right hemisphere 30.1
2527 Male, age 74, both hemispheres 29.7
2045 Male, age 76, both hemispheres 21.9
Hippocampus, CA2
nTPM: 34.5
1963 Male, age 80, left hemisphere 40.1
2249 Male, age 74, both hemispheres 36.3
1892 Male, age 76, both hemispheres 34.1
2437 Female, age 94, left hemisphere 33.2
2113 Female, age 91, right hemisphere 31.8
1940 Female, age 85, left hemisphere 31.3
Hippocampus, CA3
nTPM: 28.4
1867 Male, age 76, both hemispheres 33.0
1891 Female, age 85, both hemispheres 29.6
2620 Female, age 94, left hemisphere 29.1
2861 Female, age 67, both hemispheres 27.5
2137 Male, age 80, left hemisphere 26.5
2436 Male, age 74, both hemispheres 24.7
Parahippocampal cortex
nTPM: 27.1
1990 Female, age 91, right hemisphere 32.9
2692 Male, age 74, both hemispheres 31.1
2245 Female, age 91, both hemispheres 29.8
1933 Female, age 85, both hemispheres 29.6
2532 Female, age 72, left hemisphere 27.7
1850 Male, age 80, both hemispheres 27.2
2018 Male, age 76, both hemispheres 26.0
2622 Female, age 67, right hemisphere 23.9
2250 Female, age 67, right hemisphere 22.8
2693 Female, age 94, both hemispheres 20.4
Perirhinal gyrus
nTPM: 25.9
1794 Male, age 80, right hemisphere 30.3
1841 Female, age 85, right hemisphere 26.5
1847 Female, age 91, left hemisphere 26.5
2848 Male, age 76, right hemisphere 23.2
2521 Female, age 94, right hemisphere 23.1
Subiculum
nTPM: 32.8
2042 Male, age 76, both hemispheres 39.4
1977 Female, age 85, both hemispheres 35.7
1901 Male, age 80, both hemispheres 34.1
2619 Male, age 74, both hemispheres 33.8
2729 Female, age 91, right hemisphere 28.2
2438 Female, age 94, left hemisphere 25.8

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 52.5
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 52.5
Samples: 197

Max nTPM: 123.0
Min nTPM: 15.2
Std nTPM: 16.0
Median nTPM: 50.5
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 123.0
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 102.4
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 90.8
GTEX-1399T-0011-R1b-SM-5DUWN 60-69 years, male 87.0
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 86.2
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 82.9
GTEX-1HR98-0011-R1a-SM-ARZLQ 60-69 years, male 81.8
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 80.5
GTEX-17HII-0011-R1b-SM-7MGVW 50-59 years, male 80.0
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 79.1
GTEX-1HSMO-0011-R1a-SM-CM2SV 60-69 years, male 79.1
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 18.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 18.0
FF:10169-103B7 60 years, female 19.7
FF:10153-102I9 76 years, female 16.2

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 76.0
Pig sample Sample description nTPM
Subiculum
nTPM: 57.1
Samples: 4

Max nTPM: 59.5
Min nTPM: 55.0
Sample A Female 57.0
Sample B Female 56.8
Sample C Male 55.0
Sample D Male 59.5
Dorsal hippocampus
nTPM: 76.0
Samples: 4

Max nTPM: 85.3
Min nTPM: 66.3
Sample A Female 83.6
Sample B Female 68.6
Sample C Male 85.3
Sample D Male 66.3
Entorhinal cortex
nTPM: 63.0
Samples: 4

Max nTPM: 67.7
Min nTPM: 60.8
Sample A Female 62.0
Sample B Female 60.8
Sample C Male 61.5
Sample D Male 67.7
Ventral hippocampus
nTPM: 65.5
Samples: 4

Max nTPM: 79.8
Min nTPM: 56.7
Sample A Female 57.9
Sample B Female 56.7
Sample C Male 67.6
Sample D Male 79.8

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 33.1
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 26.9
Samples: 4

Max nTPM: 32.5
Min nTPM: 18.6
Sample A Male 32.5
Sample B Male 30.3
Sample C Female 26.2
Sample D Female 18.6
Hippocampal formation
nTPM: 33.1
Samples: 4

Max nTPM: 44.7
Min nTPM: 23.9
Sample A Male 23.9
Sample B Male 25.5
Sample C Female 38.1
Sample D Female 44.7

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 4.4
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 4.4
69015817 Antisense, RP_050315_01_G05, Mouse strain C57BL/6J (56 days, male) 4.4

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