MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:66.1 nTPM
HPA Brain:52.1 nTPM
GTEx:66.1 nTPM
FANTOM5:25.1 Scaled Tags Per Million
Pig:89.3 nTPM
Mouse:27.1 nTPM
Allen mouse:2.7 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 52.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 47.1
2586 Male, age 75, left hemisphere 56.8
2411 Female, age 72, unknown 55.8
2019 Male, age 18, unknown 52.9
2828 Female, age 72, unknown 52.9
1870 Female, age 42, unknown 44.3
1830 Male, age 51, unknown 43.8
1833 Male, age 53, unknown 43.6
1827 Male, age 72, unknown 43.4
2666 Male, age 74, left hemisphere 40.9
2219 Male, age 76, both hemispheres 36.3
Dorsal raphe nucleus
nTPM: 43.3
2750 Male, age 76, both hemispheres 52.9
2298 Female, age 72, unknown 46.0
1828 Male, age 53, unknown 42.0
2016 Female, age 72, unknown 40.9
2047 Male, age 72, unknown 34.9
Inferior colliculus
nTPM: 32.3
2097 Female, age 72, unknown 33.9
1890 Male, age 53, unknown 33.7
1848 Female, age 42, unknown 32.2
2849 Male, age 72, unknown 29.6
Median raphe nucleus
nTPM: 36.3
2220 Male, age 76, midline 36.3
Periaquaductal grey, anterior
nTPM: 44.5
1795 Male, age 51, unknown 47.6
1947 Male, age 18, unknown 43.5
2502 Female, age 75, unknown 42.6
Periaquaductal grey, dorsal
nTPM: 28.3
2464 Female, age 72, unknown 35.4
1831 Male, age 72, unknown 32.8
1840 Male, age 53, unknown 23.2
2850 Male, age 76, both hemispheres 22.0
Periaquaductal grey, lateral
nTPM: 31.7
2272 Male, age 74, both hemispheres 39.7
2053 Male, age 18, unknown 31.4
2140 Male, age 76, both hemispheres 23.9
Pretectal area
nTPM: 40.7
2007 Male, age 72, unknown 55.7
1817 Female, age 42, unknown 46.9
1815 Male, age 53, unknown 44.9
1816 Male, age 51, unknown 43.1
2273 Male, age 74, both hemispheres 42.0
2667 Female, age 75, unknown 38.8
1944 Female, age 72, unknown 38.1
2407 Male, age 75, both hemispheres 37.4
2825 Male, age 18, unknown 35.0
2316 Male, age 76, right hemisphere 34.5
2224 Female, age 72, unknown 30.9
Red nucleus
nTPM: 52.1
2785 Male, age 18, unknown 61.8
2769 Male, age 72, unknown 59.4
2503 Female, age 72, unknown 58.9
1821 Female, age 72, unknown 55.3
2227 Male, age 72, unknown 55.2
1904 Male, age 53, unknown 54.4
1865 Male, age 51, unknown 52.6
1954 Female, age 42, unknown 50.1
2823 Male, age 76, right hemisphere 49.8
2588 Male, age 74, left hemisphere 47.8
2584 Male, age 75, left hemisphere 41.6
2725 Female, age 75, unknown 38.5
Substantia nigra
nTPM: 42.6
1851 Male, age 51, unknown 50.5
2583 Male, age 75, right hemisphere 49.9
1916 Female, age 42, unknown 49.5
1941 Male, age 53, unknown 48.5
1889 Female, age 72, unknown 44.2
2665 Male, age 74, both hemispheres 42.8
2590 Female, age 75, unknown 42.3
2699 Male, age 18, unknown 36.6
2409 Female, age 72, unknown 34.4
2241 Male, age 72, unknown 27.2
Superior colliculus
nTPM: 44.6
2668 Female, age 75, unknown 63.2
1913 Female, age 42, unknown 51.2
1995 Male, age 72, unknown 48.4
1796 Male, age 53, unknown 44.4
2261 Male, age 18, unknown 43.0
2587 Male, age 74, left hemisphere 42.6
2087 Female, age 72, unknown 40.7
2664 Male, age 75, both hemispheres 39.4
1839 Male, age 51, unknown 38.2
1895 Male, age 76, right hemisphere 34.8
Ventral tegmental area
nTPM: 42.8
2410 Female, age 72, unknown 49.7
2223 Female, age 72, unknown 46.8
1915 Female, age 42, unknown 44.5
2218 Male, age 76, both hemispheres 40.2
2021 Male, age 53, unknown 38.8
1942 Male, age 51, unknown 37.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 66.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 66.1
Samples: 139

Max nTPM: 191.8
Min nTPM: 22.3
Std nTPM: 23.0
Median nTPM: 61.9
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 191.8
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 174.3
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 142.8
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 119.4
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 113.7
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 111.0
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 108.9
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 98.9
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 97.8
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 93.4
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 93.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 25.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 25.1
FF:10158-103A5 76 years, female 25.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 89.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 81.3
Samples: 4

Max nTPM: 113.2
Min nTPM: 66.4
Sample A Female 68.1
Sample B Female 66.4
Sample C Male 77.4
Sample D Male 113.2
Midbrain
nTPM: 89.3
Samples: 4

Max nTPM: 113.6
Min nTPM: 76.0
Sample A Female 113.6
Sample B Female 89.5
Sample C Male 78.2
Sample D Male 76.0
Periaqueductal gray
nTPM: 71.1
Samples: 3

Max nTPM: 73.4
Min nTPM: 68.9
Sample B Female 71.0
Sample C Male 68.9
Sample D Male 73.4
Superior colliculi
nTPM: 75.4
Samples: 4

Max nTPM: 86.3
Min nTPM: 64.2
Sample A Female 68.8
Sample B Female 64.2
Sample C Male 86.3
Sample D Male 82.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 27.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 27.1
Samples: 4

Max nTPM: 33.2
Min nTPM: 20.7
Sample A Male 33.2
Sample B Male 28.0
Sample C Female 20.7
Sample D Female 26.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.7
69015817 Antisense, RP_050315_01_G05, Mouse strain C57BL/6J (56 days, male) 2.7

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