HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni
Consensus:70.9 nTPM
HPA Brain:37.2 nTPM
GTEx:70.9 nTPM
FANTOM5:35.1 Scaled Tags Per Million
Pig:70.3 nTPM
Mouse:34.6 nTPM
Allen mouse:3.1 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA041183Antibody HPA044248
Glial cells MediumLow
Neuronal cells MediumMedium





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 37.2
Sample id Sample description nTPM
Hippocampus
nTPM: 30.0
1898 Male, age 80, left hemisphere 45.2
2529 Female, age 94, left hemisphere 32.3
2148 Female, age 91, left hemisphere 29.6
2621 Female, age 67, right hemisphere 29.0
1855 Male, age 76, left hemisphere 24.0
1911 Female, age 85, right hemisphere 19.5
Dentate gyrus
nTPM: 28.2
2530 Female, age 94, left hemisphere 34.2
1927 Female, age 91, both hemispheres 32.1
2528 Male, age 74, both hemispheres 29.0
2531 Female, age 67, both hemispheres 26.0
2010 Male, age 76, both hemispheres 24.9
2246 Female, age 85, both hemispheres 23.2
Entorhinal gyrus
nTPM: 34.4
2613 Female, age 94, left hemisphere 38.8
1938 Female, age 85, left hemisphere 38.5
2764 Male, age 80, right hemisphere 38.0
2686 Male, age 75, right hemisphere 34.1
1787 Male, age 76, left hemisphere 32.0
2117 Female, age 91, right hemisphere 24.9
Hippocampus, CA1
nTPM: 31.6
2749 Male, age 80, left hemisphere 51.4
2527 Male, age 74, both hemispheres 33.5
2082 Female, age 91, right hemisphere 26.3
1873 Female, age 85, both hemispheres 26.0
2045 Male, age 76, both hemispheres 20.9
Hippocampus, CA2
nTPM: 30.3
1963 Male, age 80, left hemisphere 39.0
1892 Male, age 76, both hemispheres 36.7
2437 Female, age 94, left hemisphere 29.9
2249 Male, age 74, both hemispheres 27.7
2113 Female, age 91, right hemisphere 25.4
1940 Female, age 85, left hemisphere 22.7
Hippocampus, CA3
nTPM: 30.3
2137 Male, age 80, left hemisphere 37.2
2861 Female, age 67, both hemispheres 33.4
1867 Male, age 76, both hemispheres 32.9
2436 Male, age 74, both hemispheres 30.1
1891 Female, age 85, both hemispheres 26.5
2620 Female, age 94, left hemisphere 21.8
Parahippocampal cortex
nTPM: 31.6
1850 Male, age 80, both hemispheres 40.7
1990 Female, age 91, right hemisphere 37.6
2692 Male, age 74, both hemispheres 34.3
2250 Female, age 67, right hemisphere 32.2
1933 Female, age 85, both hemispheres 31.7
2622 Female, age 67, right hemisphere 31.5
2245 Female, age 91, both hemispheres 30.8
2693 Female, age 94, both hemispheres 27.5
2532 Female, age 72, left hemisphere 25.3
2018 Male, age 76, both hemispheres 24.4
Perirhinal gyrus
nTPM: 37.2
1847 Female, age 91, left hemisphere 51.9
1794 Male, age 80, right hemisphere 42.6
1841 Female, age 85, right hemisphere 33.6
2521 Female, age 94, right hemisphere 32.0
2848 Male, age 76, right hemisphere 26.0
Subiculum
nTPM: 30.1
1901 Male, age 80, both hemispheres 37.7
2619 Male, age 74, both hemispheres 35.3
1977 Female, age 85, both hemispheres 31.8
2438 Female, age 94, left hemisphere 29.5
2729 Female, age 91, right hemisphere 25.0
2042 Male, age 76, both hemispheres 21.0

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 70.9
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 70.9
Samples: 197

Max nTPM: 194.0
Min nTPM: 21.5
Std nTPM: 29.2
Median nTPM: 63.8
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 194.0
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 187.6
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 164.6
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 161.3
GTEX-1LG7Y-0011-R1a-SM-EYYWV 50-59 years, male 151.8
GTEX-NL3H-0011-R1a-SM-48TDJ 60-69 years, male 141.8
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 137.7
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 133.3
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 128.4
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 125.8
GTEX-ZF28-0011-R1a-SM-4WWD1 60-69 years, male 123.6
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 35.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 35.1
FF:10169-103B7 60 years, female 43.6
FF:10153-102I9 76 years, female 26.6

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 70.3
Pig sample Sample description nTPM
Subiculum
nTPM: 55.0
Samples: 4

Max nTPM: 78.9
Min nTPM: 43.9
Sample A Female 78.9
Sample B Female 50.1
Sample C Male 43.9
Sample D Male 46.9
Dorsal hippocampus
nTPM: 65.3
Samples: 4

Max nTPM: 84.4
Min nTPM: 39.4
Sample A Female 84.4
Sample B Female 56.2
Sample C Male 81.1
Sample D Male 39.4
Entorhinal cortex
nTPM: 70.4
Samples: 4

Max nTPM: 93.0
Min nTPM: 51.8
Sample A Female 59.3
Sample B Female 93.0
Sample C Male 77.3
Sample D Male 51.8
Ventral hippocampus
nTPM: 53.7
Samples: 4

Max nTPM: 64.1
Min nTPM: 45.3
Sample A Female 49.7
Sample B Female 45.3
Sample C Male 64.1
Sample D Male 55.7

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 34.6
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 33.8
Samples: 4

Max nTPM: 37.7
Min nTPM: 30.1
Sample A Male 30.1
Sample B Male 33.8
Sample C Female 37.7
Sample D Female 33.7
Hippocampal formation
nTPM: 34.6
Samples: 4

Max nTPM: 39.0
Min nTPM: 29.3
Sample A Male 39.0
Sample B Male 29.3
Sample C Female 33.6
Sample D Female 36.5

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 3.1
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 3.1
68544997 Antisense, RP_050118_02_G02, Mouse strain C57BL/6J (56 days, male) 3.1

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