MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:77.8 nTPM
HPA Brain:39.7 nTPM
GTEx:77.8 nTPM
FANTOM5:22.4 Scaled Tags Per Million
Pig:70.5 nTPM
Mouse:26.8 nTPM
Allen mouse:1.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 39.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 33.4
2019 Male, age 18, unknown 60.3
2586 Male, age 75, left hemisphere 48.1
2411 Female, age 72, unknown 32.8
2666 Male, age 74, left hemisphere 30.5
1870 Female, age 42, unknown 29.1
1827 Male, age 72, unknown 27.7
2219 Male, age 76, both hemispheres 26.9
1833 Male, age 53, unknown 26.8
2828 Female, age 72, unknown 26.4
1830 Male, age 51, unknown 24.8
Dorsal raphe nucleus
nTPM: 35.7
1828 Male, age 53, unknown 47.4
2047 Male, age 72, unknown 44.0
2298 Female, age 72, unknown 32.9
2016 Female, age 72, unknown 27.5
2750 Male, age 76, both hemispheres 26.7
Inferior colliculus
nTPM: 32.7
1848 Female, age 42, unknown 37.1
1890 Male, age 53, unknown 34.2
2849 Male, age 72, unknown 29.9
2097 Female, age 72, unknown 29.6
Median raphe nucleus
nTPM: 28.5
2220 Male, age 76, midline 28.5
Periaquaductal grey, anterior
nTPM: 28.5
2502 Female, age 75, unknown 31.3
1795 Male, age 51, unknown 27.4
1947 Male, age 18, unknown 26.8
Periaquaductal grey, dorsal
nTPM: 24.7
2464 Female, age 72, unknown 30.1
1840 Male, age 53, unknown 26.6
2850 Male, age 76, both hemispheres 23.7
1831 Male, age 72, unknown 18.6
Periaquaductal grey, lateral
nTPM: 20.0
2140 Male, age 76, both hemispheres 20.7
2053 Male, age 18, unknown 19.8
2272 Male, age 74, both hemispheres 19.7
Pretectal area
nTPM: 32.7
2007 Male, age 72, unknown 58.9
1817 Female, age 42, unknown 52.1
1816 Male, age 51, unknown 42.0
1944 Female, age 72, unknown 34.7
1815 Male, age 53, unknown 31.0
2667 Female, age 75, unknown 27.2
2224 Female, age 72, unknown 25.8
2825 Male, age 18, unknown 23.2
2407 Male, age 75, both hemispheres 23.1
2316 Male, age 76, right hemisphere 21.6
2273 Male, age 74, both hemispheres 20.6
Red nucleus
nTPM: 39.7
1821 Female, age 72, unknown 49.8
2785 Male, age 18, unknown 49.0
2503 Female, age 72, unknown 44.4
2769 Male, age 72, unknown 43.8
2227 Male, age 72, unknown 42.6
2588 Male, age 74, left hemisphere 42.2
1954 Female, age 42, unknown 36.3
2725 Female, age 75, unknown 34.5
1865 Male, age 51, unknown 34.3
2823 Male, age 76, right hemisphere 34.3
2584 Male, age 75, left hemisphere 33.7
1904 Male, age 53, unknown 32.1
Substantia nigra
nTPM: 34.3
1941 Male, age 53, unknown 48.1
2665 Male, age 74, both hemispheres 43.7
1889 Female, age 72, unknown 39.8
1916 Female, age 42, unknown 37.6
1851 Male, age 51, unknown 36.5
2583 Male, age 75, right hemisphere 33.5
2590 Female, age 75, unknown 29.5
2409 Female, age 72, unknown 27.0
2241 Male, age 72, unknown 25.2
2699 Male, age 18, unknown 22.5
Superior colliculus
nTPM: 28.3
2668 Female, age 75, unknown 37.0
1895 Male, age 76, right hemisphere 36.0
2664 Male, age 75, both hemispheres 31.8
1839 Male, age 51, unknown 30.9
2087 Female, age 72, unknown 30.7
2587 Male, age 74, left hemisphere 26.1
2261 Male, age 18, unknown 24.7
1796 Male, age 53, unknown 24.6
1913 Female, age 42, unknown 20.9
1995 Male, age 72, unknown 20.4
Ventral tegmental area
nTPM: 30.9
2223 Female, age 72, unknown 39.0
1915 Female, age 42, unknown 35.2
2410 Female, age 72, unknown 33.1
2218 Male, age 76, both hemispheres 28.1
1942 Male, age 51, unknown 28.0
2021 Male, age 53, unknown 22.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 77.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 77.8
Samples: 139

Max nTPM: 218.2
Min nTPM: 32.5
Std nTPM: 26.8
Median nTPM: 73.1
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 218.2
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 165.6
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 158.5
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 141.2
GTEX-PWO3-0011-R2A-SM-2S1OX 60-69 years, female 136.7
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 136.4
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 133.1
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 120.3
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 119.5
GTEX-1CB4G-0011-R2a-SM-9QEGQ 60-69 years, male 116.0
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 114.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 22.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 22.4
FF:10158-103A5 76 years, female 22.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 70.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 58.5
Samples: 4

Max nTPM: 80.3
Min nTPM: 43.8
Sample A Female 80.3
Sample B Female 50.4
Sample C Male 59.4
Sample D Male 43.8
Midbrain
nTPM: 62.2
Samples: 4

Max nTPM: 71.2
Min nTPM: 56.6
Sample A Female 58.5
Sample B Female 62.5
Sample C Male 71.2
Sample D Male 56.6
Periaqueductal gray
nTPM: 45.6
Samples: 3

Max nTPM: 48.8
Min nTPM: 39.9
Sample B Female 48.2
Sample C Male 48.8
Sample D Male 39.9
Superior colliculi
nTPM: 70.5
Samples: 4

Max nTPM: 82.4
Min nTPM: 59.5
Sample A Female 82.4
Sample B Female 61.3
Sample C Male 78.7
Sample D Male 59.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 26.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 26.8
Samples: 4

Max nTPM: 28.8
Min nTPM: 23.5
Sample A Male 28.8
Sample B Male 27.8
Sample C Female 23.5
Sample D Female 27.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.5
68544997 Antisense, RP_050118_02_G02, Mouse strain C57BL/6J (56 days, male) 1.5

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