MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:18.2 nTPM
HPA Brain:52.1 nTPM
GTEx:18.2 nTPM
FANTOM5:74.7 Scaled Tags Per Million
Pig:55.1 nTPM
Mouse:16.8 nTPM
Allen mouse:7.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 52.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 48.3
2586 Male, age 75, left hemisphere 60.9
2019 Male, age 18, unknown 51.7
1830 Male, age 51, unknown 50.4
1833 Male, age 53, unknown 50.0
1870 Female, age 42, unknown 50.0
2828 Female, age 72, unknown 49.7
2666 Male, age 74, left hemisphere 45.9
2411 Female, age 72, unknown 45.1
1827 Male, age 72, unknown 40.3
2219 Male, age 76, both hemispheres 39.0
Dorsal raphe nucleus
nTPM: 41.1
2750 Male, age 76, both hemispheres 45.0
1828 Male, age 53, unknown 42.4
2047 Male, age 72, unknown 41.2
2016 Female, age 72, unknown 39.0
2298 Female, age 72, unknown 38.1
Inferior colliculus
nTPM: 38.7
2849 Male, age 72, unknown 45.7
1848 Female, age 42, unknown 39.0
1890 Male, age 53, unknown 38.0
2097 Female, age 72, unknown 32.2
Median raphe nucleus
nTPM: 42.0
2220 Male, age 76, midline 42.0
Periaquaductal grey, anterior
nTPM: 44.8
2502 Female, age 75, unknown 53.0
1947 Male, age 18, unknown 41.0
1795 Male, age 51, unknown 40.4
Periaquaductal grey, dorsal
nTPM: 40.7
2850 Male, age 76, both hemispheres 50.8
2464 Female, age 72, unknown 38.7
1840 Male, age 53, unknown 37.0
1831 Male, age 72, unknown 36.1
Periaquaductal grey, lateral
nTPM: 44.8
2140 Male, age 76, both hemispheres 49.6
2272 Male, age 74, both hemispheres 43.8
2053 Male, age 18, unknown 41.1
Pretectal area
nTPM: 42.5
2407 Male, age 75, both hemispheres 47.5
1817 Female, age 42, unknown 47.0
1815 Male, age 53, unknown 46.6
2007 Male, age 72, unknown 46.2
2825 Male, age 18, unknown 42.9
2667 Female, age 75, unknown 41.7
1816 Male, age 51, unknown 40.1
1944 Female, age 72, unknown 39.8
2273 Male, age 74, both hemispheres 39.8
2224 Female, age 72, unknown 38.1
2316 Male, age 76, right hemisphere 38.0
Red nucleus
nTPM: 52.1
2584 Male, age 75, left hemisphere 58.0
2785 Male, age 18, unknown 57.0
1904 Male, age 53, unknown 55.3
1865 Male, age 51, unknown 54.8
2769 Male, age 72, unknown 52.0
2725 Female, age 75, unknown 51.9
2227 Male, age 72, unknown 51.5
2823 Male, age 76, right hemisphere 50.9
1954 Female, age 42, unknown 50.6
2588 Male, age 74, left hemisphere 48.7
1821 Female, age 72, unknown 47.0
2503 Female, age 72, unknown 47.0
Substantia nigra
nTPM: 40.6
2583 Male, age 75, right hemisphere 49.2
1851 Male, age 51, unknown 43.8
2699 Male, age 18, unknown 41.5
1889 Female, age 72, unknown 41.4
2665 Male, age 74, both hemispheres 40.2
1916 Female, age 42, unknown 39.9
2590 Female, age 75, unknown 39.4
2409 Female, age 72, unknown 38.6
1941 Male, age 53, unknown 38.5
2241 Male, age 72, unknown 33.7
Superior colliculus
nTPM: 43.7
1995 Male, age 72, unknown 53.5
1913 Female, age 42, unknown 50.9
2664 Male, age 75, both hemispheres 48.4
1839 Male, age 51, unknown 43.4
2587 Male, age 74, left hemisphere 42.6
2261 Male, age 18, unknown 41.6
1796 Male, age 53, unknown 40.6
2087 Female, age 72, unknown 40.6
2668 Female, age 75, unknown 38.0
1895 Male, age 76, right hemisphere 37.7
Ventral tegmental area
nTPM: 41.8
2223 Female, age 72, unknown 46.8
2410 Female, age 72, unknown 44.8
2021 Male, age 53, unknown 41.0
1942 Male, age 51, unknown 40.3
2218 Male, age 76, both hemispheres 39.8
1915 Female, age 42, unknown 37.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 18.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 18.2
Samples: 139

Max nTPM: 41.4
Min nTPM: 9.9
Std nTPM: 4.2
Median nTPM: 17.6
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 41.4
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 29.4
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 29.1
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 28.4
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 27.5
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 26.5
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 26.0
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 25.7
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 25.2
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 24.7
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 24.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 74.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 74.7
FF:10158-103A5 76 years, female 74.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 55.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 55.1
Samples: 4

Max nTPM: 70.5
Min nTPM: 41.1
Sample A Female 64.4
Sample B Female 44.5
Sample C Male 70.5
Sample D Male 41.1
Midbrain
nTPM: 48.2
Samples: 4

Max nTPM: 52.2
Min nTPM: 43.9
Sample A Female 49.5
Sample B Female 43.9
Sample C Male 52.2
Sample D Male 47.3
Periaqueductal gray
nTPM: 51.2
Samples: 3

Max nTPM: 59.8
Min nTPM: 42.6
Sample B Female 42.6
Sample C Male 59.8
Sample D Male 51.3
Superior colliculi
nTPM: 47.8
Samples: 4

Max nTPM: 55.9
Min nTPM: 42.1
Sample A Female 55.9
Sample B Female 42.1
Sample C Male 44.5
Sample D Male 48.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 16.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 16.8
Samples: 4

Max nTPM: 18.5
Min nTPM: 15.7
Sample A Male 15.7
Sample B Male 15.8
Sample C Female 18.5
Sample D Female 17.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 7.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 7.0
68845771 Antisense, RP_050224_02_E03, Mouse strain C57BL/6J (56 days, male) 7.0

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