BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni
Consensus:22.8 nTPM
HPA Brain:48.0 nTPM
GTEx:22.8 nTPM
FANTOM5:120.8 Scaled Tags Per Million
Pig:45.3 nTPM
Mouse:164.3 nTPM
Allen mouse:1.8 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA022013
Glial cells Low
Neuronal cells High


BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 48.0
Sample id Sample description nTPM
Caudate nucleus
nTPM: 33.4
2481 Female, age 94, left hemisphere 45.9
2290 Female, age 72, unknown 38.7
2846 Female, age 79, unknown 36.8
1857 Female, age 85, left hemisphere 34.7
1854 Male, age 80, left hemisphere 32.3
1781 Male, age 74, unknown 31.9
2288 Male, age 75, left hemisphere 29.2
2289 Male, age 61, right hemisphere 18.0
Globus pallidus, externus
nTPM: 44.2
2395 Male, age 75, both hemispheres 55.9
1996 Male, age 80, right hemisphere 49.7
2772 Female, age 79, unknown 49.3
2567 Female, age 72, unknown 38.1
2646 Male, age 61, right hemisphere 27.7
Globus pallidus, internus
nTPM: 48.0
2287 Male, age 75, right hemisphere 61.8
2111 Female, age 85, right hemisphere 61.3
2778 Female, age 91, both hemispheres 54.2
2037 Male, age 80, right hemisphere 41.3
1818 Male, age 74, unknown 40.1
2483 Female, age 94, right hemisphere 39.5
2566 Female, age 72, unknown 37.7
Nucleus accumbens
nTPM: 38.0
2391 Female, age 94, left hemisphere 55.6
2698 Female, age 72, unknown 43.7
2286 Male, age 75, left hemisphere 38.7
1856 Female, age 91, right hemisphere 36.7
1783 Male, age 74, unknown 35.8
1806 Female, age 85, left hemisphere 34.4
2732 Male, age 80, right hemisphere 30.3
2824 Male, age 61, right hemisphere 28.3
Nucleus basalis of Meynert
nTPM: 33.5
2821 Male, age 75, both hemispheres 48.2
2484 Female, age 94, left hemisphere 29.9
2393 Male, age 80, right hemisphere 29.7
2569 Male, age 61, both hemispheres 26.2
Nucleus of the diagonal band
nTPM: 32.4
1812 Female, age 91, both hemispheres 39.4
2195 Female, age 85, both hemispheres 35.4
2775 Male, age 80, right hemisphere 31.6
1979 Male, age 74, unknown 29.1
2029 Male, age 61, right hemisphere 26.4
Putamen
nTPM: 34.3
2482 Female, age 94, left hemisphere 48.1
1829 Male, age 74, unknown 33.5
2489 Female, age 72, unknown 33.4
2647 Male, age 75, left hemisphere 33.4
1937 Female, age 91, right hemisphere 31.8
2466 Female, age 79, unknown 31.1
1838 Male, age 80, right hemisphere 29.1
Septal nuclei
nTPM: 32.8
1960 Male, age 74, unknown 43.4
2031 Female, age 72, unknown 35.7
2199 Male, age 80, right hemisphere 31.6
2059 Female, age 85, both hemispheres 30.7
2394 Male, age 61, left hemisphere 30.7
2629 Female, age 94, right hemisphere 30.7
2009 Female, age 91, both hemispheres 26.8
Stria terminalis, bed nucleus
nTPM: 27.4
1974 Female, age 91, both hemispheres 32.7
2486 Female, age 94, both hemispheres 26.7
2201 Male, age 74, unknown 22.7

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 22.8
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 20.5
Samples: 246

Max nTPM: 42.7
Min nTPM: 6.7
Std nTPM: 6.4
Median nTPM: 19.9
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 42.7
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 40.4
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 40.0
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 39.7
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 39.5
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 36.5
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 33.9
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 33.3
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 33.0
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 32.5
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 32.4
Show allShow less
Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 22.8
Samples: 246

Max nTPM: 53.2
Min nTPM: 2.5
Std nTPM: 11.0
Median nTPM: 21.9
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 53.2
GTEX-X4EP-0011-R6A-SM-3P629 60-69 years, female 52.7
GTEX-145MH-0011-R6a-SM-5PNZ7 50-59 years, male 49.7
GTEX-16YQH-0011-R6b-SM-7938T 30-39 years, male 49.3
GTEX-ZUA1-0011-R6b-SM-4YCDD 40-49 years, male 48.1
GTEX-13X6J-0011-R6a-SM-5PNUB 50-59 years, male 46.5
GTEX-1B996-0011-R6b-SM-793AQ 60-69 years, male 46.3
GTEX-1GN73-0011-R6b-SM-CJI2T 60-69 years, male 46.3
GTEX-1C6WA-0011-R6a-SM-7PBYP 60-69 years, male 44.4
GTEX-1B933-0011-R6b-SM-79OOQ 50-59 years, female 43.7
GTEX-XLM4-0011-R6A-SM-4AT4B 60-69 years, male 43.7
Show allShow less
Brain - Putamen (basal ganglia)
Average nTPM: 20.7
Samples: 205

Max nTPM: 46.8
Min nTPM: 5.6
Std nTPM: 7.2
Median nTPM: 20.6
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 46.8
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 43.5
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 43.1
GTEX-R55E-0011-R7A-SM-2TC5Z 20-29 years, male 37.4
GTEX-1HB9E-0011-R7b-SM-A9G1Q 50-59 years, male 37.2
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 36.8
GTEX-ZUA1-0011-R7b-SM-4YCDP 40-49 years, male 35.5
GTEX-1GZ2Q-0011-R7b-SM-9OSWN 40-49 years, male 35.4
GTEX-1I1GV-0011-R7a-SM-ARU6R 60-69 years, male 33.6
GTEX-145MH-0011-R7a-SM-5PNWH 50-59 years, male 32.9
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 32.0
Show allShow less

BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 120.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 120.7
FF:10164-103B2 76 years, female 120.7
Nucleus accumbens
Scaled Tags Per Million: 100.4
FF:10037-101F1 23-56 years, mixed 100.4
Putamen
Scaled Tags Per Million: 118.8
FF:10176-103C5 60 years, female 118.8
Globus pallidus
Scaled Tags Per Million: 120.8
FF:10161-103A8 76 years, female 134.9
FF:10175-103C4 60 years, female 106.7

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 45.3
Pig sample Sample description nTPM
Caudate
nTPM: 39.2
Samples: 4

Max nTPM: 40.3
Min nTPM: 37.3
Sample A Female 39.2
Sample B Female 40.1
Sample C Male 40.3
Sample D Male 37.3
Putamen
nTPM: 45.3
Samples: 4

Max nTPM: 54.3
Min nTPM: 38.2
Sample A Female 43.9
Sample B Female 38.2
Sample C Male 54.3
Sample D Male 44.6
Septum
nTPM: 45.0
Samples: 4

Max nTPM: 53.8
Min nTPM: 39.8
Sample A Female 53.8
Sample B Female 39.8
Sample C Male 46.0
Sample D Male 40.4
Ventral pallidum
nTPM: 39.8
Samples: 4

Max nTPM: 44.2
Min nTPM: 34.2
Sample A Female 44.2
Sample B Female 38.7
Sample C Male 34.2
Sample D Male 42.1

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 164.3
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 98.9
Samples: 4

Max nTPM: 111.9
Min nTPM: 88.3
Sample A Male 88.5
Sample B Male 88.3
Sample C Female 111.9
Sample D Female 106.7
Septum
nTPM: 164.3
Samples: 4

Max nTPM: 205.7
Min nTPM: 115.3
Sample A Male 115.3
Sample B Male 205.7
Sample C Female 170.7
Sample D Female 165.4
Ventral forebrain
nTPM: 91.9
Samples: 4

Max nTPM: 103.5
Min nTPM: 77.0
Sample A Male 91.0
Sample B Male 77.0
Sample C Female 103.5
Sample D Female 96.1

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 1.8
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 1.8
69526898 Antisense, RP_050421_01_H02, Mouse strain C57BL/6J (56 days, male) 1.8
Pallidum
Expression energy: 0.6
69526898 Antisense, RP_050421_01_H02, Mouse strain C57BL/6J (56 days, male) 0.6

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org