MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:28.2 nTPM
HPA Brain:50.8 nTPM
GTEx:28.2 nTPM
FANTOM5:148.8 Scaled Tags Per Million
Pig:50.2 nTPM
Mouse:65.8 nTPM
Allen mouse:0.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 50.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 38.0
1870 Female, age 42, unknown 58.1
1830 Male, age 51, unknown 41.1
2828 Female, age 72, unknown 40.7
2411 Female, age 72, unknown 40.4
1833 Male, age 53, unknown 37.9
2019 Male, age 18, unknown 37.1
2666 Male, age 74, left hemisphere 36.0
1827 Male, age 72, unknown 32.6
2586 Male, age 75, left hemisphere 28.3
2219 Male, age 76, both hemispheres 28.1
Dorsal raphe nucleus
nTPM: 35.8
2750 Male, age 76, both hemispheres 51.9
2298 Female, age 72, unknown 36.6
1828 Male, age 53, unknown 31.9
2016 Female, age 72, unknown 30.7
2047 Male, age 72, unknown 28.0
Inferior colliculus
nTPM: 29.5
1890 Male, age 53, unknown 34.7
2097 Female, age 72, unknown 29.4
1848 Female, age 42, unknown 27.2
2849 Male, age 72, unknown 26.9
Median raphe nucleus
nTPM: 50.8
2220 Male, age 76, midline 50.8
Periaquaductal grey, anterior
nTPM: 35.8
1947 Male, age 18, unknown 39.6
2502 Female, age 75, unknown 34.9
1795 Male, age 51, unknown 32.9
Periaquaductal grey, dorsal
nTPM: 26.9
2850 Male, age 76, both hemispheres 29.7
1831 Male, age 72, unknown 29.6
2464 Female, age 72, unknown 25.6
1840 Male, age 53, unknown 22.8
Periaquaductal grey, lateral
nTPM: 29.7
2053 Male, age 18, unknown 31.9
2140 Male, age 76, both hemispheres 28.9
2272 Male, age 74, both hemispheres 28.4
Pretectal area
nTPM: 34.5
2007 Male, age 72, unknown 40.2
2407 Male, age 75, both hemispheres 39.3
1815 Male, age 53, unknown 39.0
1817 Female, age 42, unknown 37.2
2316 Male, age 76, right hemisphere 36.6
2825 Male, age 18, unknown 34.3
1816 Male, age 51, unknown 32.1
1944 Female, age 72, unknown 31.1
2224 Female, age 72, unknown 30.9
2273 Male, age 74, both hemispheres 30.8
2667 Female, age 75, unknown 28.1
Red nucleus
nTPM: 48.8
1865 Male, age 51, unknown 57.9
1904 Male, age 53, unknown 57.1
1821 Female, age 72, unknown 52.3
1954 Female, age 42, unknown 52.1
2227 Male, age 72, unknown 50.8
2503 Female, age 72, unknown 50.7
2769 Male, age 72, unknown 49.3
2725 Female, age 75, unknown 48.4
2823 Male, age 76, right hemisphere 44.3
2785 Male, age 18, unknown 44.1
2584 Male, age 75, left hemisphere 40.4
2588 Male, age 74, left hemisphere 38.3
Substantia nigra
nTPM: 34.6
2590 Female, age 75, unknown 42.0
2583 Male, age 75, right hemisphere 40.7
1851 Male, age 51, unknown 40.2
1916 Female, age 42, unknown 37.2
1889 Female, age 72, unknown 34.6
2699 Male, age 18, unknown 32.0
2409 Female, age 72, unknown 30.4
2665 Male, age 74, both hemispheres 30.4
1941 Male, age 53, unknown 29.9
2241 Male, age 72, unknown 29.1
Superior colliculus
nTPM: 35.0
2587 Male, age 74, left hemisphere 48.7
1913 Female, age 42, unknown 47.3
1995 Male, age 72, unknown 45.3
2668 Female, age 75, unknown 34.6
2261 Male, age 18, unknown 33.8
1796 Male, age 53, unknown 32.1
2087 Female, age 72, unknown 29.5
1839 Male, age 51, unknown 27.8
1895 Male, age 76, right hemisphere 26.3
2664 Male, age 75, both hemispheres 24.1
Ventral tegmental area
nTPM: 41.5
2223 Female, age 72, unknown 57.8
2021 Male, age 53, unknown 39.8
2218 Male, age 76, both hemispheres 39.5
1915 Female, age 42, unknown 38.6
1942 Male, age 51, unknown 37.5
2410 Female, age 72, unknown 36.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 28.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 28.2
Samples: 139

Max nTPM: 73.8
Min nTPM: 7.7
Std nTPM: 11.6
Median nTPM: 25.8
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 73.8
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 67.0
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 65.7
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 62.1
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 54.5
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 54.5
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 54.1
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 52.3
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 45.7
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 45.4
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 44.4
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 148.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 148.8
FF:10158-103A5 76 years, female 148.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 50.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 46.8
Samples: 4

Max nTPM: 53.8
Min nTPM: 42.4
Sample A Female 53.8
Sample B Female 47.4
Sample C Male 42.4
Sample D Male 43.5
Midbrain
nTPM: 50.2
Samples: 4

Max nTPM: 95.8
Min nTPM: 30.2
Sample A Female 95.8
Sample B Female 44.0
Sample C Male 30.8
Sample D Male 30.2
Periaqueductal gray
nTPM: 38.8
Samples: 3

Max nTPM: 43.7
Min nTPM: 35.2
Sample B Female 37.5
Sample C Male 43.7
Sample D Male 35.2
Superior colliculi
nTPM: 40.0
Samples: 4

Max nTPM: 46.7
Min nTPM: 34.6
Sample A Female 46.7
Sample B Female 44.0
Sample C Male 34.6
Sample D Male 34.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 65.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 65.8
Samples: 4

Max nTPM: 66.6
Min nTPM: 64.6
Sample A Male 65.6
Sample B Male 64.6
Sample C Female 66.6
Sample D Female 66.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.4
69526898 Antisense, RP_050421_01_H02, Mouse strain C57BL/6J (56 days, male) 0.4

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org