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BRAIN MEDULLA OBLONGATA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
PRIMARY MOUSE DATA
ANTIBODIES
AND
VALIDATION
Brain proteome
Medulla oblongata
MEDULLA OBLONGATA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:218.8 nTPM
FANTOM5:111.8 Scaled Tags Per Million
Pig:100.6 nTPM
Allen mouse:12.2 Expression energy

MEDULLA OBLONGATA - HPA Brain RNA-seq
Max nTPM 218.8
Sample id Sample description nTPM
Area postrema
nTPM: 169.5
2799 Male, age 61, both hemispheres 253.7
2054 Male, age 76, both hemispheres 162.3
2306 Male, age 80, both hemispheres 92.4
Dorsal medullary reticular nucleus
nTPM: 135.5
2040 Female, age 85, both hemispheres 184.2
2088 Male, age 76, both hemispheres 116.5
2373 Male, age 61, both hemispheres 105.9
Dorsal motor vagal complex
nTPM: 189.3
2133 Female, age 91, both hemispheres 281.4
2844 Male, age 55, unknown 221.3
2000 Male, age 74, unknown 217.1
2813 Female, age 72, unknown 210.4
2643 Male, age 74, both hemispheres 181.2
2797 Male, age 61, both hemispheres 175.3
2185 Male, age 76, both hemispheres 116.8
2807 Female, age 85, both hemispheres 111.3
Gigantocellular reticular nuclei, medullary
nTPM: 117.0
2462 Male, age 74, both hemispheres 176.9
2310 Male, age 80, both hemispheres 121.6
1876 Female, age 85, both hemispheres 121.5
2022 Male, age 76, right hemisphere 118.8
2387 Female, age 91, both hemispheres 93.2
2314 Male, age 61, both hemispheres 69.8
Gigantocellular reticular nuclei, pars
nTPM: 135.1
2168 Male, age 76, both hemispheres 187.1
2084 Female, age 85, both hemispheres 159.3
2336 Male, age 61, both hemispheres 133.3
2330 Male, age 80, both hemispheres 99.2
2706 Male, age 80, both hemispheres 96.5
Inferior olive
nTPM: 82.2
2628 Female, age 91, both hemispheres 112.0
2085 Female, age 85, both hemispheres 87.1
2563 Male, age 74, both hemispheres 74.0
2379 Male, age 80, both hemispheres 70.2
2178 Male, age 61, both hemispheres 67.4
Lateral medullary reticular nucleus
nTPM: 106.5
2044 Male, age 76, both hemispheres 166.1
2804 Female, age 91, both hemispheres 117.4
2190 Female, age 85, both hemispheres 104.8
2374 Male, age 61, both hemispheres 97.4
2852 Male, age 80, both hemispheres 88.2
2305 Male, age 74, both hemispheres 65.4
Medial olivary nucleus
nTPM: 66.3
2851 Male, age 80, both hemispheres 90.1
2138 Female, age 91, both hemispheres 84.4
1943 Male, age 61, both hemispheres 52.6
1962 Male, age 76, both hemispheres 38.3
Medial vestibular nucleus
nTPM: 180.4
2134 Male, age 76, both hemispheres 282.0
2624 Male, age 61, both hemispheres 214.3
2743 Female, age 85, both hemispheres 160.5
2801 Male, age 74, both hemispheres 154.7
2803 Female, age 91, both hemispheres 136.4
2093 Male, age 80, both hemispheres 134.5
Motor hypoglossal nucleus
nTPM: 190.8
2461 Male, age 61, both hemispheres 298.9
2132 Female, age 85, both hemispheres 176.5
2277 Male, age 76, both hemispheres 166.1
2125 Female, age 91, both hemispheres 162.6
2182 Male, age 80, both hemispheres 150.0
Nucleus ambiguus
nTPM: 125.6
2096 Female, age 85, both hemispheres 198.8
2071 Male, age 76, both hemispheres 52.5
Nucleus cuneatus
nTPM: 113.8
2131 Male, age 76, both hemispheres 177.9
2562 Male, age 61, both hemispheres 150.4
2564 Male, age 74, both hemispheres 130.6
2100 Male, age 76, both hemispheres 115.6
2376 Male, age 61, both hemispheres 100.8
2808 Female, age 85, both hemispheres 93.2
2381 Male, age 80, both hemispheres 90.6
2805 Female, age 91, both hemispheres 88.1
2380 Male, age 80, both hemispheres 76.8
Nucleus gracilis
nTPM: 87.7
2627 Male, age 74, both hemispheres 123.1
2299 Female, age 85, both hemispheres 76.9
2382 Male, age 80, both hemispheres 63.1
Nucleus raphe obscurus
nTPM: 67.3
2800 Male, age 61, midline 92.6
2845 Female, age 85, midline 77.9
2142 Male, age 76, midline 31.4
Nucleus raphe pallidus
nTPM: 102.1
2183 Male, age 80, midline 168.4
1924 Male, age 61, midline 99.0
2145 Male, age 76, midline 39.0
Nucleus tractus solitarii
nTPM: 178.3
2191 Female, age 85, both hemispheres 181.4
2144 Female, age 91, right hemisphere 179.6
2656 Male, age 76, both hemispheres 176.8
2307 Male, age 80, both hemispheres 175.2
Parvicellular reticular nuclei
nTPM: 126.7
2119 Male, age 80, both hemispheres 140.2
2558 Male, age 74, both hemispheres 131.7
2095 Male, age 76, both hemispheres 108.2
Parvicellular reticular nuclei, medullary
nTPM: 188.3
2091 Female, age 85, both hemispheres 208.5
2189 Female, age 91, both hemispheres 200.0
2181 Male, age 80, left hemisphere 156.2
Peritrigeminal nucleus
nTPM: 135.1
2179 Male, age 61, both hemispheres 145.4
2067 Female, age 85, both hemispheres 140.8
2136 Male, age 76, both hemispheres 119.1
Prepositus hypoglossal nucleus
nTPM: 146.8
2855 Female, age 85, right hemisphere 157.7
2086 Male, age 80, both hemispheres 136.0
Spinal trigeminal nucleus, caudal
nTPM: 178.7
2390 Female, age 91, both hemispheres 358.8
2447 Male, age 76, both hemispheres 157.4
2642 Male, age 74, both hemispheres 145.0
2308 Male, age 80, both hemispheres 126.2
2312 Male, age 61, both hemispheres 106.2
Spinal trigeminal nucleus, interpolar
nTPM: 218.8
2625 Male, age 61, both hemispheres 456.7
2066 Male, age 76, right hemisphere 186.8
2033 Male, age 80, both hemispheres 172.7
2389 Female, age 91, both hemispheres 143.5
2386 Female, age 85, both hemispheres 134.2
Spinal vestibular nucleus
nTPM: 128.1
2780 Male, age 80, both hemispheres 166.5
2186 Female, age 91, both hemispheres 153.6
2796 Male, age 61, both hemispheres 124.1
2806 Female, age 85, both hemispheres 120.3
2748 Male, age 76, both hemispheres 119.3
2384 Male, age 74, both hemispheres 84.9
Superior vestibular nucleus
nTPM: 135.3
2015 Male, age 80, both hemispheres 149.2
2383 Male, age 74, both hemispheres 129.1
2061 Male, age 76, both hemispheres 127.6
Ventral medullary reticular nucleus
nTPM: 114.7
2060 Male, age 76, both hemispheres 142.0
2372 Male, age 61, both hemispheres 87.3
Ventrolateral medulla, A1-C1 cell groups
nTPM: 120.0
2741 Female, age 85, both hemispheres 154.0
1986 Male, age 76, both hemispheres 144.6
2302 Female, age 91, both hemispheres 116.8
2180 Male, age 61, both hemispheres 115.3
2118 Male, age 80, both hemispheres 69.4

MEDULLA OBLONGATA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max Scaled Tags Per Million 111.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Medulla oblongata
Scaled Tags Per Million: 111.8
FF:10038-101F2 18-64 years, mixed 202.3
FF:10155-103A2 76 years, female 77.8
FF:10174-103C3 60 years, female 55.3

MEDULLA OBLONGATA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM 100.6
Pig sample Sample description nTPM
Medulla oblongata
nTPM: 100.6
Samples: 4

Max nTPM: 126.7
Min nTPM: 46.9
Sample A Female 126.7
Sample B Female 113.4
Sample C Male 115.4
Sample D Male 46.9

MEDULLA OBLONGATA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max Expression energy 12.2
Allen experiment id Experiment description Expression energy
Medulla oblongata
Expression energy: 12.2
69169911 Antisense, RP_050321_04_D11, Mouse strain C57BL/6J (56 days, male) 12.2

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