MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:65.1 nTPM
HPA Brain:214.2 nTPM
GTEx:65.1 nTPM
FANTOM5:30.0 Scaled Tags Per Million
Pig:121.2 nTPM
Mouse:135.8 nTPM
Allen mouse:12.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 214.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 159.5
2586 Male, age 75, left hemisphere 254.4
2666 Male, age 74, left hemisphere 205.8
2219 Male, age 76, both hemispheres 199.7
1827 Male, age 72, unknown 167.2
2828 Female, age 72, unknown 143.1
2411 Female, age 72, unknown 137.1
1833 Male, age 53, unknown 127.2
2019 Male, age 18, unknown 126.0
1870 Female, age 42, unknown 121.1
1830 Male, age 51, unknown 113.9
Dorsal raphe nucleus
nTPM: 176.7
2047 Male, age 72, unknown 213.9
1828 Male, age 53, unknown 209.5
2298 Female, age 72, unknown 201.9
2750 Male, age 76, both hemispheres 134.2
2016 Female, age 72, unknown 124.2
Inferior colliculus
nTPM: 132.0
1848 Female, age 42, unknown 148.5
2849 Male, age 72, unknown 147.4
2097 Female, age 72, unknown 119.4
1890 Male, age 53, unknown 112.7
Median raphe nucleus
nTPM: 188.0
2220 Male, age 76, midline 188.0
Periaquaductal grey, anterior
nTPM: 172.9
1795 Male, age 51, unknown 197.0
1947 Male, age 18, unknown 182.6
2502 Female, age 75, unknown 139.0
Periaquaductal grey, dorsal
nTPM: 135.4
1840 Male, age 53, unknown 170.5
2850 Male, age 76, both hemispheres 140.5
1831 Male, age 72, unknown 118.5
2464 Female, age 72, unknown 112.1
Periaquaductal grey, lateral
nTPM: 127.5
2140 Male, age 76, both hemispheres 132.2
2053 Male, age 18, unknown 126.3
2272 Male, age 74, both hemispheres 124.0
Pretectal area
nTPM: 175.2
1816 Male, age 51, unknown 232.7
2407 Male, age 75, both hemispheres 221.3
1944 Female, age 72, unknown 198.6
1817 Female, age 42, unknown 191.9
2007 Male, age 72, unknown 188.3
2667 Female, age 75, unknown 180.3
1815 Male, age 53, unknown 172.5
2224 Female, age 72, unknown 160.6
2825 Male, age 18, unknown 145.7
2273 Male, age 74, both hemispheres 138.2
2316 Male, age 76, right hemisphere 97.4
Red nucleus
nTPM: 89.7
2584 Male, age 75, left hemisphere 202.9
2785 Male, age 18, unknown 124.4
1821 Female, age 72, unknown 101.9
1954 Female, age 42, unknown 90.2
2769 Male, age 72, unknown 86.6
2227 Male, age 72, unknown 85.9
1865 Male, age 51, unknown 77.4
1904 Male, age 53, unknown 69.4
2503 Female, age 72, unknown 67.4
2823 Male, age 76, right hemisphere 63.3
2588 Male, age 74, left hemisphere 61.5
2725 Female, age 75, unknown 45.6
Substantia nigra
nTPM: 214.2
1916 Female, age 42, unknown 265.4
2590 Female, age 75, unknown 250.8
2665 Male, age 74, both hemispheres 241.9
1851 Male, age 51, unknown 232.8
1941 Male, age 53, unknown 229.3
2583 Male, age 75, right hemisphere 224.7
2241 Male, age 72, unknown 196.5
1889 Female, age 72, unknown 185.7
2699 Male, age 18, unknown 162.8
2409 Female, age 72, unknown 152.3
Superior colliculus
nTPM: 168.6
2664 Male, age 75, both hemispheres 293.7
2668 Female, age 75, unknown 278.9
2261 Male, age 18, unknown 185.0
1796 Male, age 53, unknown 181.0
2087 Female, age 72, unknown 177.4
1839 Male, age 51, unknown 137.0
1895 Male, age 76, right hemisphere 121.0
1913 Female, age 42, unknown 107.0
1995 Male, age 72, unknown 106.0
2587 Male, age 74, left hemisphere 98.7
Ventral tegmental area
nTPM: 173.0
2218 Male, age 76, both hemispheres 190.3
1915 Female, age 42, unknown 189.0
2410 Female, age 72, unknown 183.6
1942 Male, age 51, unknown 166.0
2223 Female, age 72, unknown 161.1
2021 Male, age 53, unknown 147.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 65.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 65.1
Samples: 139

Max nTPM: 222.6
Min nTPM: 5.9
Std nTPM: 36.3
Median nTPM: 58.9
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 222.6
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 216.2
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 158.1
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 151.4
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 134.8
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 129.8
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 129.0
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 126.1
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 125.7
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 125.5
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 121.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 30.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 30.0
FF:10158-103A5 76 years, female 30.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 121.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 118.2
Samples: 4

Max nTPM: 173.1
Min nTPM: 31.1
Sample A Female 173.1
Sample B Female 96.5
Sample C Male 172.2
Sample D Male 31.1
Midbrain
nTPM: 110.2
Samples: 4

Max nTPM: 172.9
Min nTPM: 51.7
Sample A Female 51.7
Sample B Female 77.9
Sample C Male 172.9
Sample D Male 138.3
Periaqueductal gray
nTPM: 92.0
Samples: 3

Max nTPM: 122.2
Min nTPM: 73.4
Sample B Female 73.4
Sample C Male 122.2
Sample D Male 80.5
Superior colliculi
nTPM: 121.2
Samples: 4

Max nTPM: 159.1
Min nTPM: 66.8
Sample A Female 118.4
Sample B Female 66.8
Sample C Male 159.1
Sample D Male 140.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 135.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 135.8
Samples: 4

Max nTPM: 148.0
Min nTPM: 124.2
Sample A Male 124.2
Sample B Male 139.2
Sample C Female 148.0
Sample D Female 131.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 12.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 12.6
69169911 Antisense, RP_050321_04_D11, Mouse strain C57BL/6J (56 days, male) 12.6

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