MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:138.6 nTPM
HPA Brain:81.1 nTPM
GTEx:138.6 nTPM
FANTOM5:132.0 Scaled Tags Per Million
Pig:76.0 nTPM
Mouse:53.3 nTPM
Allen mouse:0.4 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 81.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 65.9
1870 Female, age 42, unknown 84.9
1830 Male, age 51, unknown 73.1
1833 Male, age 53, unknown 72.5
2411 Female, age 72, unknown 70.0
2828 Female, age 72, unknown 67.5
1827 Male, age 72, unknown 67.4
2019 Male, age 18, unknown 64.3
2666 Male, age 74, left hemisphere 58.8
2219 Male, age 76, both hemispheres 55.3
2586 Male, age 75, left hemisphere 44.8
Dorsal raphe nucleus
nTPM: 69.2
2298 Female, age 72, unknown 77.3
2750 Male, age 76, both hemispheres 71.1
1828 Male, age 53, unknown 67.9
2047 Male, age 72, unknown 66.7
2016 Female, age 72, unknown 62.7
Inferior colliculus
nTPM: 64.3
2849 Male, age 72, unknown 70.6
2097 Female, age 72, unknown 65.2
1848 Female, age 42, unknown 60.7
1890 Male, age 53, unknown 60.7
Median raphe nucleus
nTPM: 81.1
2220 Male, age 76, midline 81.1
Periaquaductal grey, anterior
nTPM: 62.1
1947 Male, age 18, unknown 66.5
2502 Female, age 75, unknown 60.3
1795 Male, age 51, unknown 59.5
Periaquaductal grey, dorsal
nTPM: 64.2
2850 Male, age 76, both hemispheres 84.2
1831 Male, age 72, unknown 62.6
1840 Male, age 53, unknown 57.4
2464 Female, age 72, unknown 52.6
Periaquaductal grey, lateral
nTPM: 68.7
2272 Male, age 74, both hemispheres 77.0
2140 Male, age 76, both hemispheres 68.1
2053 Male, age 18, unknown 61.0
Pretectal area
nTPM: 68.1
2273 Male, age 74, both hemispheres 79.6
1817 Female, age 42, unknown 77.3
1815 Male, age 53, unknown 77.0
2667 Female, age 75, unknown 75.4
2224 Female, age 72, unknown 71.3
2825 Male, age 18, unknown 67.6
1944 Female, age 72, unknown 65.3
2407 Male, age 75, both hemispheres 62.8
2007 Male, age 72, unknown 61.6
1816 Male, age 51, unknown 57.2
2316 Male, age 76, right hemisphere 54.2
Red nucleus
nTPM: 74.2
2823 Male, age 76, right hemisphere 90.4
1821 Female, age 72, unknown 87.6
1904 Male, age 53, unknown 81.9
1954 Female, age 42, unknown 81.4
1865 Male, age 51, unknown 79.5
2725 Female, age 75, unknown 78.1
2227 Male, age 72, unknown 72.9
2503 Female, age 72, unknown 69.4
2769 Male, age 72, unknown 69.0
2785 Male, age 18, unknown 68.3
2584 Male, age 75, left hemisphere 64.1
2588 Male, age 74, left hemisphere 47.8
Substantia nigra
nTPM: 72.0
2699 Male, age 18, unknown 98.0
1916 Female, age 42, unknown 83.7
2665 Male, age 74, both hemispheres 73.7
1851 Male, age 51, unknown 72.2
2241 Male, age 72, unknown 72.0
1941 Male, age 53, unknown 71.8
1889 Female, age 72, unknown 70.6
2409 Female, age 72, unknown 66.2
2590 Female, age 75, unknown 58.6
2583 Male, age 75, right hemisphere 53.1
Superior colliculus
nTPM: 66.3
1913 Female, age 42, unknown 80.4
2587 Male, age 74, left hemisphere 78.3
1839 Male, age 51, unknown 72.0
1995 Male, age 72, unknown 69.4
1895 Male, age 76, right hemisphere 68.9
2668 Female, age 75, unknown 68.9
1796 Male, age 53, unknown 62.7
2087 Female, age 72, unknown 56.1
2261 Male, age 18, unknown 53.9
2664 Male, age 75, both hemispheres 52.1
Ventral tegmental area
nTPM: 70.6
2218 Male, age 76, both hemispheres 76.3
1915 Female, age 42, unknown 76.0
2410 Female, age 72, unknown 74.5
2223 Female, age 72, unknown 72.5
1942 Male, age 51, unknown 63.7
2021 Male, age 53, unknown 60.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 138.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 138.6
Samples: 139

Max nTPM: 353.2
Min nTPM: 64.0
Std nTPM: 40.6
Median nTPM: 130.5
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 353.2
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 286.5
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 265.4
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 239.3
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 229.8
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 225.2
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 218.3
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 207.9
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 200.3
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 198.8
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 196.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 132.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 132.0
FF:10158-103A5 76 years, female 132.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 76.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 73.0
Samples: 4

Max nTPM: 78.6
Min nTPM: 68.2
Sample A Female 78.6
Sample B Female 68.2
Sample C Male 69.5
Sample D Male 75.5
Midbrain
nTPM: 68.7
Samples: 4

Max nTPM: 86.8
Min nTPM: 58.9
Sample A Female 86.8
Sample B Female 67.1
Sample C Male 58.9
Sample D Male 61.8
Periaqueductal gray
nTPM: 67.4
Samples: 3

Max nTPM: 72.5
Min nTPM: 63.9
Sample B Female 63.9
Sample C Male 72.5
Sample D Male 65.9
Superior colliculi
nTPM: 76.1
Samples: 4

Max nTPM: 83.8
Min nTPM: 70.6
Sample A Female 83.8
Sample B Female 77.8
Sample C Male 72.0
Sample D Male 70.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 53.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 53.3
Samples: 4

Max nTPM: 56.7
Min nTPM: 49.3
Sample A Male 53.4
Sample B Male 56.7
Sample C Female 49.3
Sample D Female 53.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.4
67767459 Antisense, RP_040916_02_A09, Mouse strain C57BL/6J (56 days, male) 0.4

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