MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:56.2 nTPM
HPA Brain:53.4 nTPM
GTEx:56.2 nTPM
FANTOM5:10.4 Scaled Tags Per Million
Pig:34.5 nTPM
Mouse:5.1 nTPM
Allen mouse:0.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 53.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 22.4
2019 Male, age 18, unknown 33.9
2219 Male, age 76, both hemispheres 26.3
2828 Female, age 72, unknown 25.3
2666 Male, age 74, left hemisphere 24.9
1833 Male, age 53, unknown 23.9
1870 Female, age 42, unknown 23.7
1830 Male, age 51, unknown 21.4
1827 Male, age 72, unknown 18.2
2411 Female, age 72, unknown 17.4
2586 Male, age 75, left hemisphere 9.3
Dorsal raphe nucleus
nTPM: 34.7
2298 Female, age 72, unknown 59.7
2016 Female, age 72, unknown 39.5
1828 Male, age 53, unknown 34.5
2047 Male, age 72, unknown 21.4
2750 Male, age 76, both hemispheres 18.5
Inferior colliculus
nTPM: 24.1
1890 Male, age 53, unknown 31.0
2849 Male, age 72, unknown 25.2
2097 Female, age 72, unknown 23.2
1848 Female, age 42, unknown 17.1
Median raphe nucleus
nTPM: 18.4
2220 Male, age 76, midline 18.4
Periaquaductal grey, anterior
nTPM: 32.9
1795 Male, age 51, unknown 38.9
2502 Female, age 75, unknown 36.3
1947 Male, age 18, unknown 23.6
Periaquaductal grey, dorsal
nTPM: 41.9
2850 Male, age 76, both hemispheres 93.1
2464 Female, age 72, unknown 25.0
1840 Male, age 53, unknown 24.8
1831 Male, age 72, unknown 24.7
Periaquaductal grey, lateral
nTPM: 53.4
2272 Male, age 74, both hemispheres 72.4
2140 Male, age 76, both hemispheres 63.8
2053 Male, age 18, unknown 24.0
Pretectal area
nTPM: 24.5
2273 Male, age 74, both hemispheres 52.9
2224 Female, age 72, unknown 27.6
1817 Female, age 42, unknown 25.3
2825 Male, age 18, unknown 24.4
2007 Male, age 72, unknown 23.9
2667 Female, age 75, unknown 23.4
1815 Male, age 53, unknown 22.9
2316 Male, age 76, right hemisphere 19.9
1816 Male, age 51, unknown 19.0
1944 Female, age 72, unknown 18.9
2407 Male, age 75, both hemispheres 11.0
Red nucleus
nTPM: 29.4
2769 Male, age 72, unknown 38.8
1954 Female, age 42, unknown 36.5
2227 Male, age 72, unknown 35.7
1904 Male, age 53, unknown 35.5
1821 Female, age 72, unknown 31.6
2503 Female, age 72, unknown 29.5
2785 Male, age 18, unknown 29.1
1865 Male, age 51, unknown 28.9
2588 Male, age 74, left hemisphere 28.4
2823 Male, age 76, right hemisphere 22.5
2725 Female, age 75, unknown 21.7
2584 Male, age 75, left hemisphere 14.6
Substantia nigra
nTPM: 22.1
2665 Male, age 74, both hemispheres 40.6
2699 Male, age 18, unknown 26.0
2590 Female, age 75, unknown 24.9
1916 Female, age 42, unknown 23.1
1851 Male, age 51, unknown 22.7
1889 Female, age 72, unknown 21.0
2241 Male, age 72, unknown 18.0
2409 Female, age 72, unknown 15.9
1941 Male, age 53, unknown 14.8
2583 Male, age 75, right hemisphere 13.6
Superior colliculus
nTPM: 19.6
2587 Male, age 74, left hemisphere 30.9
1995 Male, age 72, unknown 28.4
2261 Male, age 18, unknown 24.5
2087 Female, age 72, unknown 18.2
2668 Female, age 75, unknown 18.1
1913 Female, age 42, unknown 17.3
1796 Male, age 53, unknown 17.2
1839 Male, age 51, unknown 16.5
1895 Male, age 76, right hemisphere 14.5
2664 Male, age 75, both hemispheres 10.3
Ventral tegmental area
nTPM: 20.1
2021 Male, age 53, unknown 22.1
2218 Male, age 76, both hemispheres 21.0
1942 Male, age 51, unknown 20.8
2410 Female, age 72, unknown 20.0
1915 Female, age 42, unknown 19.1
2223 Female, age 72, unknown 17.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 56.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 56.2
Samples: 139

Max nTPM: 232.3
Min nTPM: 6.9
Std nTPM: 37.0
Median nTPM: 48.4
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 232.3
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 181.2
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 175.8
GTEX-11PRG-0011-R2a-SM-69LQ5 50-59 years, male 154.7
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 141.1
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 134.2
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 125.0
GTEX-14ASI-0011-R2b-SM-5YY9H 60-69 years, male 118.3
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 117.9
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 116.1
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 114.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 10.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 10.4
FF:10158-103A5 76 years, female 10.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 34.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 24.9
Samples: 4

Max nTPM: 39.4
Min nTPM: 13.3
Sample A Female 27.1
Sample B Female 39.4
Sample C Male 13.3
Sample D Male 19.6
Midbrain
nTPM: 24.6
Samples: 4

Max nTPM: 45.3
Min nTPM: 13.9
Sample A Female 45.3
Sample B Female 18.3
Sample C Male 20.8
Sample D Male 13.9
Periaqueductal gray
nTPM: 32.2
Samples: 3

Max nTPM: 43.2
Min nTPM: 26.1
Sample B Female 27.2
Sample C Male 43.2
Sample D Male 26.1
Superior colliculi
nTPM: 34.6
Samples: 4

Max nTPM: 47.6
Min nTPM: 22.9
Sample A Female 47.6
Sample B Female 43.2
Sample C Male 22.9
Sample D Male 24.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 5.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 5.1
Samples: 4

Max nTPM: 6.8
Min nTPM: 3.6
Sample A Male 6.1
Sample B Male 6.8
Sample C Female 3.8
Sample D Female 3.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.3
68545039 Antisense, RP_050118_02_G10, Mouse strain C57BL/6J (56 days, male) 0.3

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