MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:28.0 nTPM
HPA Brain:59.4 nTPM
GTEx:28.0 nTPM
FANTOM5:93.1 Scaled Tags Per Million
Pig:55.4 nTPM
Mouse:67.1 nTPM
Allen mouse:0.8 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 59.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 54.7
2586 Male, age 75, left hemisphere 65.6
1827 Male, age 72, unknown 58.5
2666 Male, age 74, left hemisphere 57.1
1870 Female, age 42, unknown 56.5
2019 Male, age 18, unknown 54.8
2828 Female, age 72, unknown 54.2
2411 Female, age 72, unknown 53.6
1833 Male, age 53, unknown 49.7
1830 Male, age 51, unknown 49.6
2219 Male, age 76, both hemispheres 47.2
Dorsal raphe nucleus
nTPM: 51.8
2298 Female, age 72, unknown 59.0
2047 Male, age 72, unknown 52.3
1828 Male, age 53, unknown 50.9
2016 Female, age 72, unknown 48.7
2750 Male, age 76, both hemispheres 48.2
Inferior colliculus
nTPM: 59.4
2097 Female, age 72, unknown 66.0
2849 Male, age 72, unknown 59.1
1848 Female, age 42, unknown 56.2
1890 Male, age 53, unknown 56.2
Median raphe nucleus
nTPM: 47.4
2220 Male, age 76, midline 47.4
Periaquaductal grey, anterior
nTPM: 56.2
1947 Male, age 18, unknown 56.5
1795 Male, age 51, unknown 56.2
2502 Female, age 75, unknown 55.8
Periaquaductal grey, dorsal
nTPM: 54.9
1840 Male, age 53, unknown 66.5
2464 Female, age 72, unknown 54.7
2850 Male, age 76, both hemispheres 50.0
1831 Male, age 72, unknown 48.3
Periaquaductal grey, lateral
nTPM: 51.7
2053 Male, age 18, unknown 53.8
2140 Male, age 76, both hemispheres 52.4
2272 Male, age 74, both hemispheres 48.8
Pretectal area
nTPM: 56.8
2007 Male, age 72, unknown 64.3
1816 Male, age 51, unknown 63.2
1817 Female, age 42, unknown 61.5
1944 Female, age 72, unknown 57.9
2224 Female, age 72, unknown 57.9
2825 Male, age 18, unknown 57.5
2407 Male, age 75, both hemispheres 55.0
2316 Male, age 76, right hemisphere 54.5
2667 Female, age 75, unknown 52.4
1815 Male, age 53, unknown 51.0
2273 Male, age 74, both hemispheres 49.4
Red nucleus
nTPM: 50.0
2785 Male, age 18, unknown 55.6
2584 Male, age 75, left hemisphere 55.1
2588 Male, age 74, left hemisphere 53.2
1821 Female, age 72, unknown 52.5
2503 Female, age 72, unknown 51.1
2725 Female, age 75, unknown 51.1
2227 Male, age 72, unknown 50.6
2769 Male, age 72, unknown 49.2
1865 Male, age 51, unknown 46.9
1954 Female, age 42, unknown 46.9
1904 Male, age 53, unknown 46.2
2823 Male, age 76, right hemisphere 41.7
Substantia nigra
nTPM: 52.2
2583 Male, age 75, right hemisphere 59.5
2241 Male, age 72, unknown 56.2
2590 Female, age 75, unknown 55.0
2665 Male, age 74, both hemispheres 54.5
2409 Female, age 72, unknown 54.0
1889 Female, age 72, unknown 53.8
1941 Male, age 53, unknown 52.6
1851 Male, age 51, unknown 49.1
1916 Female, age 42, unknown 47.9
2699 Male, age 18, unknown 39.4
Superior colliculus
nTPM: 53.2
2664 Male, age 75, both hemispheres 59.7
2261 Male, age 18, unknown 58.3
1839 Male, age 51, unknown 57.5
1796 Male, age 53, unknown 55.8
2087 Female, age 72, unknown 54.1
2668 Female, age 75, unknown 53.1
1895 Male, age 76, right hemisphere 53.0
2587 Male, age 74, left hemisphere 50.0
1913 Female, age 42, unknown 46.1
1995 Male, age 72, unknown 44.7
Ventral tegmental area
nTPM: 50.5
2021 Male, age 53, unknown 54.4
2410 Female, age 72, unknown 51.6
1942 Male, age 51, unknown 51.3
1915 Female, age 42, unknown 49.9
2223 Female, age 72, unknown 49.4
2218 Male, age 76, both hemispheres 46.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 28.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 28.0
Samples: 139

Max nTPM: 49.5
Min nTPM: 15.2
Std nTPM: 4.6
Median nTPM: 27.5
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 49.5
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 45.7
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 42.3
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 40.2
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 39.6
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 39.5
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 39.0
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 37.7
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 36.7
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 36.6
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 33.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 93.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 93.1
FF:10158-103A5 76 years, female 93.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 55.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 49.0
Samples: 4

Max nTPM: 54.2
Min nTPM: 45.7
Sample A Female 54.2
Sample B Female 45.7
Sample C Male 49.6
Sample D Male 46.6
Midbrain
nTPM: 55.4
Samples: 4

Max nTPM: 65.4
Min nTPM: 48.3
Sample A Female 55.7
Sample B Female 48.3
Sample C Male 65.4
Sample D Male 52.1
Periaqueductal gray
nTPM: 43.3
Samples: 3

Max nTPM: 45.2
Min nTPM: 39.6
Sample B Female 45.0
Sample C Male 45.2
Sample D Male 39.6
Superior colliculi
nTPM: 52.4
Samples: 4

Max nTPM: 61.2
Min nTPM: 45.2
Sample A Female 53.0
Sample B Female 45.2
Sample C Male 61.2
Sample D Male 50.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 67.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 67.1
Samples: 4

Max nTPM: 73.2
Min nTPM: 61.8
Sample A Male 61.8
Sample B Male 68.1
Sample C Female 73.2
Sample D Female 65.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.8
71494623 Antisense, RP_050913_03_A01, Mouse strain C57BL/6J (56 days, male) 0.8

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