MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:362.8 nTPM
HPA Brain:375.8 nTPM
GTEx:362.8 nTPM
FANTOM5:617.4 Scaled Tags Per Million
Pig:323.9 nTPM
Mouse:160.9 nTPM
Allen mouse:0.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 375.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 301.6
1870 Female, age 42, unknown 386.4
2411 Female, age 72, unknown 355.8
1830 Male, age 51, unknown 352.1
2019 Male, age 18, unknown 330.2
1833 Male, age 53, unknown 322.4
2828 Female, age 72, unknown 264.8
2586 Male, age 75, left hemisphere 262.3
2666 Male, age 74, left hemisphere 256.6
2219 Male, age 76, both hemispheres 255.2
1827 Male, age 72, unknown 229.8
Dorsal raphe nucleus
nTPM: 233.9
2750 Male, age 76, both hemispheres 402.0
1828 Male, age 53, unknown 232.1
2016 Female, age 72, unknown 213.2
2047 Male, age 72, unknown 176.0
2298 Female, age 72, unknown 146.5
Inferior colliculus
nTPM: 212.7
1890 Male, age 53, unknown 243.4
1848 Female, age 42, unknown 220.5
2849 Male, age 72, unknown 194.4
2097 Female, age 72, unknown 192.6
Median raphe nucleus
nTPM: 235.1
2220 Male, age 76, midline 235.1
Periaquaductal grey, anterior
nTPM: 199.6
2502 Female, age 75, unknown 236.7
1947 Male, age 18, unknown 201.6
1795 Male, age 51, unknown 160.5
Periaquaductal grey, dorsal
nTPM: 156.9
2464 Female, age 72, unknown 212.2
1831 Male, age 72, unknown 166.5
2850 Male, age 76, both hemispheres 132.0
1840 Male, age 53, unknown 116.9
Periaquaductal grey, lateral
nTPM: 165.9
2053 Male, age 18, unknown 187.0
2272 Male, age 74, both hemispheres 176.0
2140 Male, age 76, both hemispheres 134.7
Pretectal area
nTPM: 201.7
1815 Male, age 53, unknown 260.9
2316 Male, age 76, right hemisphere 245.1
2407 Male, age 75, both hemispheres 240.9
2007 Male, age 72, unknown 228.7
1817 Female, age 42, unknown 217.1
2825 Male, age 18, unknown 205.0
2273 Male, age 74, both hemispheres 175.8
2667 Female, age 75, unknown 175.6
2224 Female, age 72, unknown 160.0
1944 Female, age 72, unknown 157.7
1816 Male, age 51, unknown 151.8
Red nucleus
nTPM: 375.8
1865 Male, age 51, unknown 455.4
1821 Female, age 72, unknown 445.8
1904 Male, age 53, unknown 422.4
2769 Male, age 72, unknown 405.0
2227 Male, age 72, unknown 404.7
2503 Female, age 72, unknown 377.6
2823 Male, age 76, right hemisphere 371.6
2785 Male, age 18, unknown 362.5
2588 Male, age 74, left hemisphere 358.0
1954 Female, age 42, unknown 347.2
2725 Female, age 75, unknown 284.2
2584 Male, age 75, left hemisphere 274.8
Substantia nigra
nTPM: 236.5
1851 Male, age 51, unknown 288.8
1889 Female, age 72, unknown 261.0
2590 Female, age 75, unknown 254.3
2409 Female, age 72, unknown 252.2
2699 Male, age 18, unknown 245.9
2583 Male, age 75, right hemisphere 229.8
1916 Female, age 42, unknown 226.6
2241 Male, age 72, unknown 209.4
1941 Male, age 53, unknown 200.3
2665 Male, age 74, both hemispheres 196.5
Superior colliculus
nTPM: 252.8
1913 Female, age 42, unknown 389.4
1995 Male, age 72, unknown 323.9
2587 Male, age 74, left hemisphere 279.2
2668 Female, age 75, unknown 278.1
1895 Male, age 76, right hemisphere 255.3
1839 Male, age 51, unknown 248.4
1796 Male, age 53, unknown 211.8
2664 Male, age 75, both hemispheres 191.7
2261 Male, age 18, unknown 179.2
2087 Female, age 72, unknown 170.7
Ventral tegmental area
nTPM: 274.0
2223 Female, age 72, unknown 405.4
2410 Female, age 72, unknown 298.5
2218 Male, age 76, both hemispheres 248.5
2021 Male, age 53, unknown 240.4
1942 Male, age 51, unknown 236.6
1915 Female, age 42, unknown 214.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 362.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 362.8
Samples: 139

Max nTPM: 1188.9
Min nTPM: 131.7
Std nTPM: 172.0
Median nTPM: 325.9
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 1188.9
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 992.2
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 986.7
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 969.6
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 750.7
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 734.0
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 711.4
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 671.5
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 610.8
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 607.1
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 571.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 617.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 617.4
FF:10158-103A5 76 years, female 617.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 323.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 256.2
Samples: 4

Max nTPM: 378.0
Min nTPM: 172.1
Sample A Female 263.8
Sample B Female 172.1
Sample C Male 210.9
Sample D Male 378.0
Midbrain
nTPM: 323.9
Samples: 4

Max nTPM: 782.6
Min nTPM: 140.8
Sample A Female 782.6
Sample B Female 213.0
Sample C Male 159.0
Sample D Male 140.8
Periaqueductal gray
nTPM: 159.9
Samples: 3

Max nTPM: 181.3
Min nTPM: 140.2
Sample B Female 181.3
Sample C Male 140.2
Sample D Male 158.2
Superior colliculi
nTPM: 204.3
Samples: 4

Max nTPM: 245.1
Min nTPM: 133.0
Sample A Female 221.6
Sample B Female 133.0
Sample C Male 217.3
Sample D Male 245.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 160.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 160.9
Samples: 4

Max nTPM: 167.6
Min nTPM: 152.5
Sample A Male 167.6
Sample B Male 152.5
Sample C Female 157.3
Sample D Female 166.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.6
69549619 Antisense, RP_050222_01_F03, Mouse strain C57BL/6J (56 days, male) 0.6

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