MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:39.2 nTPM
HPA Brain:25.2 nTPM
GTEx:39.2 nTPM
FANTOM5:92.7 Scaled Tags Per Million
Pig:37.8 nTPM
Mouse:39.7 nTPM
Allen mouse:1.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 25.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 22.4
2411 Female, age 72, unknown 26.8
1830 Male, age 51, unknown 26.2
1833 Male, age 53, unknown 25.4
1870 Female, age 42, unknown 25.4
2219 Male, age 76, both hemispheres 23.1
2019 Male, age 18, unknown 22.5
1827 Male, age 72, unknown 21.2
2666 Male, age 74, left hemisphere 19.6
2828 Female, age 72, unknown 19.1
2586 Male, age 75, left hemisphere 14.4
Dorsal raphe nucleus
nTPM: 22.8
2750 Male, age 76, both hemispheres 26.3
2016 Female, age 72, unknown 23.8
1828 Male, age 53, unknown 21.7
2298 Female, age 72, unknown 21.6
2047 Male, age 72, unknown 20.5
Inferior colliculus
nTPM: 21.9
2097 Female, age 72, unknown 23.5
1890 Male, age 53, unknown 22.4
1848 Female, age 42, unknown 21.5
2849 Male, age 72, unknown 20.2
Median raphe nucleus
nTPM: 24.0
2220 Male, age 76, midline 24.0
Periaquaductal grey, anterior
nTPM: 22.2
1947 Male, age 18, unknown 24.7
2502 Female, age 75, unknown 23.1
1795 Male, age 51, unknown 18.8
Periaquaductal grey, dorsal
nTPM: 23.7
2464 Female, age 72, unknown 25.5
2850 Male, age 76, both hemispheres 25.2
1840 Male, age 53, unknown 22.2
1831 Male, age 72, unknown 21.9
Periaquaductal grey, lateral
nTPM: 24.6
2272 Male, age 74, both hemispheres 25.7
2053 Male, age 18, unknown 24.2
2140 Male, age 76, both hemispheres 24.0
Pretectal area
nTPM: 22.6
2316 Male, age 76, right hemisphere 27.3
2273 Male, age 74, both hemispheres 26.8
2224 Female, age 72, unknown 23.5
1815 Male, age 53, unknown 23.0
2667 Female, age 75, unknown 22.7
1944 Female, age 72, unknown 22.3
2825 Male, age 18, unknown 21.8
1816 Male, age 51, unknown 20.6
2407 Male, age 75, both hemispheres 20.5
2007 Male, age 72, unknown 20.3
1817 Female, age 42, unknown 20.2
Red nucleus
nTPM: 25.2
2503 Female, age 72, unknown 28.3
1904 Male, age 53, unknown 27.5
1865 Male, age 51, unknown 27.3
1821 Female, age 72, unknown 26.8
1954 Female, age 42, unknown 26.5
2823 Male, age 76, right hemisphere 26.2
2725 Female, age 75, unknown 25.5
2227 Male, age 72, unknown 25.2
2769 Male, age 72, unknown 24.3
2588 Male, age 74, left hemisphere 24.0
2785 Male, age 18, unknown 22.6
2584 Male, age 75, left hemisphere 18.2
Substantia nigra
nTPM: 23.1
2241 Male, age 72, unknown 34.4
1916 Female, age 42, unknown 23.7
1941 Male, age 53, unknown 23.7
1851 Male, age 51, unknown 22.7
1889 Female, age 72, unknown 22.2
2699 Male, age 18, unknown 22.2
2409 Female, age 72, unknown 22.0
2590 Female, age 75, unknown 21.0
2665 Male, age 74, both hemispheres 20.4
2583 Male, age 75, right hemisphere 18.6
Superior colliculus
nTPM: 22.9
1913 Female, age 42, unknown 27.1
1895 Male, age 76, right hemisphere 25.3
2087 Female, age 72, unknown 23.9
2261 Male, age 18, unknown 23.9
2668 Female, age 75, unknown 23.2
1995 Male, age 72, unknown 23.0
1839 Male, age 51, unknown 21.8
2587 Male, age 74, left hemisphere 21.1
2664 Male, age 75, both hemispheres 20.4
1796 Male, age 53, unknown 19.7
Ventral tegmental area
nTPM: 23.1
2223 Female, age 72, unknown 25.9
1942 Male, age 51, unknown 24.0
1915 Female, age 42, unknown 22.6
2410 Female, age 72, unknown 22.4
2218 Male, age 76, both hemispheres 21.9
2021 Male, age 53, unknown 21.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 39.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 39.2
Samples: 139

Max nTPM: 96.8
Min nTPM: 16.5
Std nTPM: 12.3
Median nTPM: 37.0
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 96.8
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 89.1
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 83.4
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 67.4
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 66.5
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 65.5
GTEX-147GR-0011-R2b-SM-5S2RQ 60-69 years, male 61.8
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 59.4
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 59.1
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 58.9
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 57.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 92.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 92.7
FF:10158-103A5 76 years, female 92.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 37.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 30.0
Samples: 4

Max nTPM: 38.3
Min nTPM: 20.7
Sample A Female 20.7
Sample B Female 31.7
Sample C Male 29.3
Sample D Male 38.3
Midbrain
nTPM: 30.7
Samples: 4

Max nTPM: 36.3
Min nTPM: 23.7
Sample A Female 23.7
Sample B Female 36.3
Sample C Male 28.8
Sample D Male 34.0
Periaqueductal gray
nTPM: 37.8
Samples: 3

Max nTPM: 43.0
Min nTPM: 33.5
Sample B Female 36.9
Sample C Male 33.5
Sample D Male 43.0
Superior colliculi
nTPM: 29.8
Samples: 4

Max nTPM: 34.3
Min nTPM: 23.8
Sample A Female 23.8
Sample B Female 28.4
Sample C Male 32.6
Sample D Male 34.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 39.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 39.7
Samples: 4

Max nTPM: 42.3
Min nTPM: 37.9
Sample A Male 37.9
Sample B Male 38.8
Sample C Female 39.9
Sample D Female 42.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.0
69549647 Antisense, RP_050310_02_C06, Mouse strain C57BL/6J (56 days, male) 1.0

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