MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:5.8 nTPM
HPA Brain:53.3 nTPM
GTEx:5.8 nTPM
FANTOM5:90.3 Scaled Tags Per Million
Pig:12.6 nTPM
Mouse:5.2 nTPM
Allen mouse:0.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 53.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 53.3
2586 Male, age 75, left hemisphere 80.9
2666 Male, age 74, left hemisphere 58.5
2828 Female, age 72, unknown 55.0
2019 Male, age 18, unknown 52.3
1827 Male, age 72, unknown 51.8
1833 Male, age 53, unknown 49.1
1830 Male, age 51, unknown 48.4
2411 Female, age 72, unknown 48.1
1870 Female, age 42, unknown 45.1
2219 Male, age 76, both hemispheres 44.2
Dorsal raphe nucleus
nTPM: 45.0
2047 Male, age 72, unknown 49.3
2750 Male, age 76, both hemispheres 46.8
1828 Male, age 53, unknown 45.2
2016 Female, age 72, unknown 42.6
2298 Female, age 72, unknown 41.1
Inferior colliculus
nTPM: 43.7
1848 Female, age 42, unknown 44.2
2849 Male, age 72, unknown 44.2
1890 Male, age 53, unknown 43.3
2097 Female, age 72, unknown 43.1
Median raphe nucleus
nTPM: 44.2
2220 Male, age 76, midline 44.2
Periaquaductal grey, anterior
nTPM: 51.0
2502 Female, age 75, unknown 53.6
1795 Male, age 51, unknown 51.5
1947 Male, age 18, unknown 47.9
Periaquaductal grey, dorsal
nTPM: 42.0
2464 Female, age 72, unknown 47.0
1840 Male, age 53, unknown 44.3
1831 Male, age 72, unknown 43.6
2850 Male, age 76, both hemispheres 33.3
Periaquaductal grey, lateral
nTPM: 41.1
2053 Male, age 18, unknown 45.7
2140 Male, age 76, both hemispheres 39.1
2272 Male, age 74, both hemispheres 38.6
Pretectal area
nTPM: 51.9
1816 Male, age 51, unknown 60.0
2007 Male, age 72, unknown 59.8
1817 Female, age 42, unknown 58.4
1815 Male, age 53, unknown 55.4
2407 Male, age 75, both hemispheres 54.3
1944 Female, age 72, unknown 54.1
2667 Female, age 75, unknown 49.7
2316 Male, age 76, right hemisphere 49.6
2825 Male, age 18, unknown 49.0
2224 Female, age 72, unknown 43.4
2273 Male, age 74, both hemispheres 37.1
Red nucleus
nTPM: 50.8
2584 Male, age 75, left hemisphere 69.7
2588 Male, age 74, left hemisphere 58.5
2785 Male, age 18, unknown 54.1
2823 Male, age 76, right hemisphere 52.2
2769 Male, age 72, unknown 50.9
1904 Male, age 53, unknown 48.7
2227 Male, age 72, unknown 48.5
1865 Male, age 51, unknown 47.2
2503 Female, age 72, unknown 46.1
1954 Female, age 42, unknown 44.6
1821 Female, age 72, unknown 44.5
2725 Female, age 75, unknown 44.1
Substantia nigra
nTPM: 51.0
2583 Male, age 75, right hemisphere 61.9
2665 Male, age 74, both hemispheres 59.8
2590 Female, age 75, unknown 54.9
1916 Female, age 42, unknown 53.0
1889 Female, age 72, unknown 51.1
1941 Male, age 53, unknown 50.0
1851 Male, age 51, unknown 47.3
2409 Female, age 72, unknown 44.8
2241 Male, age 72, unknown 43.6
2699 Male, age 18, unknown 43.6
Superior colliculus
nTPM: 51.2
2664 Male, age 75, both hemispheres 65.1
2087 Female, age 72, unknown 56.1
2261 Male, age 18, unknown 55.3
2668 Female, age 75, unknown 52.6
1796 Male, age 53, unknown 50.4
1839 Male, age 51, unknown 48.7
1913 Female, age 42, unknown 46.7
2587 Male, age 74, left hemisphere 46.7
1995 Male, age 72, unknown 45.7
1895 Male, age 76, right hemisphere 44.6
Ventral tegmental area
nTPM: 46.9
1942 Male, age 51, unknown 51.5
2410 Female, age 72, unknown 48.2
2021 Male, age 53, unknown 46.5
2223 Female, age 72, unknown 46.3
1915 Female, age 42, unknown 45.5
2218 Male, age 76, both hemispheres 43.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 5.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 5.8
Samples: 139

Max nTPM: 11.3
Min nTPM: 2.3
Std nTPM: 1.2
Median nTPM: 5.7
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 11.3
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 9.1
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 8.8
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 8.7
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 8.6
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 8.2
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 8.1
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 7.9
GTEX-15RJE-0011-R2b-SM-79OMP 40-49 years, male 7.8
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 7.6
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 7.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 90.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 90.3
FF:10158-103A5 76 years, female 90.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 12.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 12.2
Samples: 4

Max nTPM: 12.9
Min nTPM: 11.2
Sample A Female 12.9
Sample B Female 11.2
Sample C Male 12.9
Sample D Male 11.6
Midbrain
nTPM: 12.6
Samples: 4

Max nTPM: 16.2
Min nTPM: 9.3
Sample A Female 13.0
Sample B Female 9.3
Sample C Male 16.2
Sample D Male 12.0
Periaqueductal gray
nTPM: 9.7
Samples: 3

Max nTPM: 10.5
Min nTPM: 8.8
Sample B Female 9.8
Sample C Male 10.5
Sample D Male 8.8
Superior colliculi
nTPM: 12.4
Samples: 4

Max nTPM: 12.6
Min nTPM: 12.1
Sample A Female 12.4
Sample B Female 12.4
Sample C Male 12.1
Sample D Male 12.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 5.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 5.2
Samples: 4

Max nTPM: 5.5
Min nTPM: 4.9
Sample A Male 5.5
Sample B Male 5.2
Sample C Female 4.9
Sample D Female 5.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.3
73497147 Antisense, RP_051121_01_A09, Mouse strain C57BL/6J (56 days, male) 0.3

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