MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:79.0 nTPM
HPA Brain:285.4 nTPM
GTEx:79.0 nTPM
FANTOM5:53.4 Scaled Tags Per Million
Pig:78.2 nTPM
Mouse:98.1 nTPM
Allen mouse:5.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 285.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 168.2
2586 Male, age 75, left hemisphere 328.3
2019 Male, age 18, unknown 311.6
2828 Female, age 72, unknown 237.4
1827 Male, age 72, unknown 184.9
2666 Male, age 74, left hemisphere 149.7
2219 Male, age 76, both hemispheres 111.4
1870 Female, age 42, unknown 110.4
2411 Female, age 72, unknown 90.5
1833 Male, age 53, unknown 79.8
1830 Male, age 51, unknown 77.8
Dorsal raphe nucleus
nTPM: 125.7
2298 Female, age 72, unknown 161.3
2016 Female, age 72, unknown 141.4
1828 Male, age 53, unknown 139.1
2047 Male, age 72, unknown 111.2
2750 Male, age 76, both hemispheres 75.7
Inferior colliculus
nTPM: 107.1
2097 Female, age 72, unknown 123.9
1890 Male, age 53, unknown 120.7
2849 Male, age 72, unknown 95.8
1848 Female, age 42, unknown 87.9
Median raphe nucleus
nTPM: 87.8
2220 Male, age 76, midline 87.8
Periaquaductal grey, anterior
nTPM: 192.8
1795 Male, age 51, unknown 306.5
2502 Female, age 75, unknown 183.9
1947 Male, age 18, unknown 87.9
Periaquaductal grey, dorsal
nTPM: 165.7
2850 Male, age 76, both hemispheres 193.7
1840 Male, age 53, unknown 172.9
1831 Male, age 72, unknown 170.7
2464 Female, age 72, unknown 125.5
Periaquaductal grey, lateral
nTPM: 190.6
2272 Male, age 74, both hemispheres 224.1
2140 Male, age 76, both hemispheres 193.9
2053 Male, age 18, unknown 154.0
Pretectal area
nTPM: 285.4
1816 Male, age 51, unknown 528.5
2007 Male, age 72, unknown 460.0
1817 Female, age 42, unknown 443.3
1815 Male, age 53, unknown 429.5
1944 Female, age 72, unknown 367.1
2273 Male, age 74, both hemispheres 224.2
2667 Female, age 75, unknown 178.7
2407 Male, age 75, both hemispheres 178.0
2224 Female, age 72, unknown 133.2
2316 Male, age 76, right hemisphere 100.0
2825 Male, age 18, unknown 96.9
Red nucleus
nTPM: 105.6
2785 Male, age 18, unknown 304.8
2584 Male, age 75, left hemisphere 177.6
2725 Female, age 75, unknown 118.6
2588 Male, age 74, left hemisphere 104.4
2503 Female, age 72, unknown 97.8
2769 Male, age 72, unknown 77.0
2227 Male, age 72, unknown 76.8
1904 Male, age 53, unknown 74.3
1954 Female, age 42, unknown 63.4
1865 Male, age 51, unknown 62.1
2823 Male, age 76, right hemisphere 59.8
1821 Female, age 72, unknown 50.4
Substantia nigra
nTPM: 155.8
1889 Female, age 72, unknown 283.5
2665 Male, age 74, both hemispheres 213.8
2583 Male, age 75, right hemisphere 205.4
1916 Female, age 42, unknown 155.3
2590 Female, age 75, unknown 152.1
1851 Male, age 51, unknown 151.4
2409 Female, age 72, unknown 110.1
1941 Male, age 53, unknown 104.3
2241 Male, age 72, unknown 94.2
2699 Male, age 18, unknown 87.9
Superior colliculus
nTPM: 214.6
2664 Male, age 75, both hemispheres 346.6
2087 Female, age 72, unknown 333.0
2261 Male, age 18, unknown 269.5
1796 Male, age 53, unknown 239.9
1913 Female, age 42, unknown 228.3
1995 Male, age 72, unknown 205.5
2668 Female, age 75, unknown 181.0
2587 Male, age 74, left hemisphere 153.9
1839 Male, age 51, unknown 117.1
1895 Male, age 76, right hemisphere 71.3
Ventral tegmental area
nTPM: 118.8
1942 Male, age 51, unknown 133.0
2410 Female, age 72, unknown 124.9
2021 Male, age 53, unknown 123.9
1915 Female, age 42, unknown 117.0
2218 Male, age 76, both hemispheres 107.3
2223 Female, age 72, unknown 106.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 79.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 79.0
Samples: 139

Max nTPM: 256.6
Min nTPM: 16.9
Std nTPM: 34.1
Median nTPM: 74.0
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 256.6
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 163.0
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 162.9
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 159.6
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 145.5
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 143.2
GTEX-13G51-0011-R2b-SM-5LZXS 60-69 years, male 136.1
GTEX-T6MN-0011-R2A-SM-32QOW 50-59 years, male 128.2
GTEX-13FXS-0011-R2b-SM-5K7XX 50-59 years, male 127.3
GTEX-13N2G-0011-R2a-SM-5MR4Q 60-69 years, male 126.4
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 124.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 53.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 53.4
FF:10158-103A5 76 years, female 53.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 78.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 46.0
Samples: 4

Max nTPM: 53.5
Min nTPM: 40.6
Sample A Female 48.5
Sample B Female 40.6
Sample C Male 53.5
Sample D Male 41.5
Midbrain
nTPM: 73.8
Samples: 4

Max nTPM: 148.2
Min nTPM: 39.0
Sample A Female 39.0
Sample B Female 42.4
Sample C Male 148.2
Sample D Male 65.4
Periaqueductal gray
nTPM: 47.8
Samples: 3

Max nTPM: 56.2
Min nTPM: 43.1
Sample B Female 44.2
Sample C Male 56.2
Sample D Male 43.1
Superior colliculi
nTPM: 78.2
Samples: 4

Max nTPM: 115.7
Min nTPM: 58.5
Sample A Female 58.5
Sample B Female 75.0
Sample C Male 115.7
Sample D Male 63.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 98.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 98.1
Samples: 4

Max nTPM: 111.2
Min nTPM: 82.8
Sample A Male 111.2
Sample B Male 82.8
Sample C Female 99.0
Sample D Female 99.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 5.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 5.2
74821712 Antisense, RP_060321_02_C05, Mouse strain C57BL/6J (56 days, male) 5.2

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