MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:18.3 nTPM
HPA Brain:49.2 nTPM
GTEx:18.3 nTPM
FANTOM5:56.3 Scaled Tags Per Million
Pig:7.4 nTPM
Mouse:8.1 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 49.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 39.0
2019 Male, age 18, unknown 48.9
1830 Male, age 51, unknown 47.0
1833 Male, age 53, unknown 44.4
2411 Female, age 72, unknown 43.2
2828 Female, age 72, unknown 41.0
2666 Male, age 74, left hemisphere 37.9
2219 Male, age 76, both hemispheres 35.3
1870 Female, age 42, unknown 33.7
1827 Male, age 72, unknown 31.2
2586 Male, age 75, left hemisphere 27.3
Dorsal raphe nucleus
nTPM: 28.1
2750 Male, age 76, both hemispheres 38.6
2016 Female, age 72, unknown 28.9
1828 Male, age 53, unknown 26.9
2298 Female, age 72, unknown 23.9
2047 Male, age 72, unknown 22.1
Inferior colliculus
nTPM: 28.3
1890 Male, age 53, unknown 30.8
2849 Male, age 72, unknown 29.1
1848 Female, age 42, unknown 28.0
2097 Female, age 72, unknown 25.3
Median raphe nucleus
nTPM: 27.9
2220 Male, age 76, midline 27.9
Periaquaductal grey, anterior
nTPM: 23.7
1947 Male, age 18, unknown 27.2
2502 Female, age 75, unknown 22.2
1795 Male, age 51, unknown 21.7
Periaquaductal grey, dorsal
nTPM: 24.7
2464 Female, age 72, unknown 31.4
2850 Male, age 76, both hemispheres 24.8
1831 Male, age 72, unknown 23.2
1840 Male, age 53, unknown 19.2
Periaquaductal grey, lateral
nTPM: 28.5
2272 Male, age 74, both hemispheres 30.8
2053 Male, age 18, unknown 27.4
2140 Male, age 76, both hemispheres 27.3
Pretectal area
nTPM: 33.1
1815 Male, age 53, unknown 43.4
2316 Male, age 76, right hemisphere 42.2
2007 Male, age 72, unknown 41.2
1817 Female, age 42, unknown 33.9
1944 Female, age 72, unknown 33.5
2667 Female, age 75, unknown 31.3
2407 Male, age 75, both hemispheres 30.1
1816 Male, age 51, unknown 29.5
2273 Male, age 74, both hemispheres 28.0
2825 Male, age 18, unknown 25.9
2224 Female, age 72, unknown 24.9
Red nucleus
nTPM: 49.2
2823 Male, age 76, right hemisphere 62.5
1904 Male, age 53, unknown 59.3
1865 Male, age 51, unknown 54.8
2503 Female, age 72, unknown 53.3
2227 Male, age 72, unknown 50.8
2785 Male, age 18, unknown 50.2
2769 Male, age 72, unknown 49.6
2588 Male, age 74, left hemisphere 47.2
1821 Female, age 72, unknown 46.6
1954 Female, age 42, unknown 43.0
2725 Female, age 75, unknown 39.9
2584 Male, age 75, left hemisphere 32.9
Substantia nigra
nTPM: 39.3
2590 Female, age 75, unknown 50.6
2699 Male, age 18, unknown 43.4
1851 Male, age 51, unknown 39.9
2409 Female, age 72, unknown 39.7
1941 Male, age 53, unknown 38.0
2583 Male, age 75, right hemisphere 38.0
2665 Male, age 74, both hemispheres 37.6
1889 Female, age 72, unknown 37.4
1916 Female, age 42, unknown 34.5
2241 Male, age 72, unknown 33.4
Superior colliculus
nTPM: 36.1
1913 Female, age 42, unknown 52.0
1995 Male, age 72, unknown 47.0
1895 Male, age 76, right hemisphere 45.8
2668 Female, age 75, unknown 36.2
2587 Male, age 74, left hemisphere 34.6
2087 Female, age 72, unknown 34.1
1839 Male, age 51, unknown 30.9
1796 Male, age 53, unknown 30.6
2261 Male, age 18, unknown 27.1
2664 Male, age 75, both hemispheres 23.1
Ventral tegmental area
nTPM: 36.7
2410 Female, age 72, unknown 45.9
2218 Male, age 76, both hemispheres 41.0
2223 Female, age 72, unknown 40.7
1942 Male, age 51, unknown 34.6
1915 Female, age 42, unknown 31.5
2021 Male, age 53, unknown 26.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 18.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 18.3
Samples: 139

Max nTPM: 57.8
Min nTPM: 8.0
Std nTPM: 7.1
Median nTPM: 16.9
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 57.8
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 50.5
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 35.1
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 34.1
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 33.6
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 31.9
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 30.5
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 30.1
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 28.7
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 27.9
GTEX-1F6IF-0011-R2b-SM-9QEHB 60-69 years, male 27.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 56.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 56.3
FF:10158-103A5 76 years, female 56.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 7.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 6.2
Samples: 4

Max nTPM: 7.4
Min nTPM: 4.9
Sample A Female 4.9
Sample B Female 6.5
Sample C Male 6.1
Sample D Male 7.4
Midbrain
nTPM: 5.9
Samples: 4

Max nTPM: 7.3
Min nTPM: 4.2
Sample A Female 4.2
Sample B Female 7.3
Sample C Male 6.1
Sample D Male 6.1
Periaqueductal gray
nTPM: 7.4
Samples: 3

Max nTPM: 8.0
Min nTPM: 7.0
Sample B Female 7.3
Sample C Male 8.0
Sample D Male 7.0
Superior colliculi
nTPM: 6.4
Samples: 4

Max nTPM: 7.3
Min nTPM: 5.5
Sample A Female 5.5
Sample B Female 7.3
Sample C Male 5.9
Sample D Male 7.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 8.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 8.1
Samples: 4

Max nTPM: 8.5
Min nTPM: 7.7
Sample A Male 8.5
Sample B Male 8.3
Sample C Female 8.0
Sample D Female 7.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
69817193 Antisense, RP_050510_02_G11, Mouse strain C57BL/6J (56 days, male) 0.0

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