MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:85.2 nTPM
HPA Brain:72.2 nTPM
GTEx:85.2 nTPM
FANTOM5:53.6 Scaled Tags Per Million
Pig:62.7 nTPM
Mouse:62.8 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 72.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 67.3
2411 Female, age 72, unknown 79.5
2666 Male, age 74, left hemisphere 72.8
1870 Female, age 42, unknown 71.1
1827 Male, age 72, unknown 69.8
2019 Male, age 18, unknown 68.3
2828 Female, age 72, unknown 67.0
2586 Male, age 75, left hemisphere 66.9
1833 Male, age 53, unknown 64.0
1830 Male, age 51, unknown 62.5
2219 Male, age 76, both hemispheres 51.5
Dorsal raphe nucleus
nTPM: 62.1
2750 Male, age 76, both hemispheres 72.1
2298 Female, age 72, unknown 71.2
2047 Male, age 72, unknown 59.7
1828 Male, age 53, unknown 58.4
2016 Female, age 72, unknown 49.2
Inferior colliculus
nTPM: 54.4
1848 Female, age 42, unknown 57.6
2097 Female, age 72, unknown 55.2
2849 Male, age 72, unknown 54.7
1890 Male, age 53, unknown 50.3
Median raphe nucleus
nTPM: 63.3
2220 Male, age 76, midline 63.3
Periaquaductal grey, anterior
nTPM: 66.2
1947 Male, age 18, unknown 71.8
1795 Male, age 51, unknown 63.4
2502 Female, age 75, unknown 63.4
Periaquaductal grey, dorsal
nTPM: 47.7
2464 Female, age 72, unknown 50.8
2850 Male, age 76, both hemispheres 49.8
1840 Male, age 53, unknown 47.5
1831 Male, age 72, unknown 42.8
Periaquaductal grey, lateral
nTPM: 50.6
2272 Male, age 74, both hemispheres 53.3
2140 Male, age 76, both hemispheres 50.3
2053 Male, age 18, unknown 48.3
Pretectal area
nTPM: 59.3
2007 Male, age 72, unknown 76.3
1817 Female, age 42, unknown 69.7
1815 Male, age 53, unknown 65.0
2667 Female, age 75, unknown 63.9
1816 Male, age 51, unknown 62.0
2825 Male, age 18, unknown 58.1
1944 Female, age 72, unknown 55.6
2316 Male, age 76, right hemisphere 52.0
2273 Male, age 74, both hemispheres 51.5
2224 Female, age 72, unknown 50.6
2407 Male, age 75, both hemispheres 47.6
Red nucleus
nTPM: 72.2
1821 Female, age 72, unknown 84.4
1865 Male, age 51, unknown 78.8
2769 Male, age 72, unknown 77.8
2725 Female, age 75, unknown 74.5
1904 Male, age 53, unknown 74.4
2227 Male, age 72, unknown 72.9
2503 Female, age 72, unknown 72.6
2785 Male, age 18, unknown 70.5
1954 Female, age 42, unknown 70.4
2588 Male, age 74, left hemisphere 68.8
2823 Male, age 76, right hemisphere 68.1
2584 Male, age 75, left hemisphere 53.2
Substantia nigra
nTPM: 63.2
1916 Female, age 42, unknown 84.8
1851 Male, age 51, unknown 72.4
1941 Male, age 53, unknown 70.9
1889 Female, age 72, unknown 67.5
2409 Female, age 72, unknown 61.2
2583 Male, age 75, right hemisphere 59.2
2699 Male, age 18, unknown 58.8
2590 Female, age 75, unknown 53.5
2665 Male, age 74, both hemispheres 52.5
2241 Male, age 72, unknown 51.6
Superior colliculus
nTPM: 59.2
1796 Male, age 53, unknown 67.8
1913 Female, age 42, unknown 63.7
2587 Male, age 74, left hemisphere 63.7
2668 Female, age 75, unknown 63.6
2261 Male, age 18, unknown 60.7
1895 Male, age 76, right hemisphere 59.8
1839 Male, age 51, unknown 58.7
2087 Female, age 72, unknown 55.3
1995 Male, age 72, unknown 54.4
2664 Male, age 75, both hemispheres 44.5
Ventral tegmental area
nTPM: 69.1
2410 Female, age 72, unknown 87.0
2223 Female, age 72, unknown 78.1
1915 Female, age 42, unknown 70.7
2218 Male, age 76, both hemispheres 67.4
1942 Male, age 51, unknown 56.8
2021 Male, age 53, unknown 54.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 85.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 85.2
Samples: 139

Max nTPM: 159.9
Min nTPM: 41.8
Std nTPM: 19.0
Median nTPM: 84.1
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 159.9
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 157.2
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 152.4
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 127.6
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 126.8
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 117.9
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 117.6
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 117.3
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 114.3
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 113.7
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 112.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 53.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 53.6
FF:10158-103A5 76 years, female 53.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 62.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 61.2
Samples: 4

Max nTPM: 72.6
Min nTPM: 46.6
Sample A Female 72.6
Sample B Female 46.6
Sample C Male 67.3
Sample D Male 58.3
Midbrain
nTPM: 62.7
Samples: 4

Max nTPM: 70.4
Min nTPM: 57.3
Sample A Female 70.4
Sample B Female 58.4
Sample C Male 57.3
Sample D Male 64.6
Periaqueductal gray
nTPM: 52.9
Samples: 3

Max nTPM: 58.3
Min nTPM: 49.0
Sample B Female 49.0
Sample C Male 58.3
Sample D Male 51.3
Superior colliculi
nTPM: 61.2
Samples: 4

Max nTPM: 68.8
Min nTPM: 48.2
Sample A Female 68.8
Sample B Female 48.2
Sample C Male 61.8
Sample D Male 65.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 62.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 62.9
Samples: 4

Max nTPM: 72.8
Min nTPM: 55.3
Sample A Male 72.8
Sample B Male 55.3
Sample C Female 58.1
Sample D Female 65.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
71724654 Antisense, RP_050921_01_D05, Mouse strain C57BL/6J (56 days, male) 0.0

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