MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:25.5 nTPM
HPA Brain:33.5 nTPM
GTEx:25.5 nTPM
FANTOM5:36.9 Scaled Tags Per Million
Pig:17.3 nTPM
Mouse:14.2 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 33.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 28.8
2411 Female, age 72, unknown 32.8
1870 Female, age 42, unknown 31.0
2019 Male, age 18, unknown 31.0
1827 Male, age 72, unknown 30.8
1830 Male, age 51, unknown 29.2
1833 Male, age 53, unknown 28.1
2828 Female, age 72, unknown 28.1
2219 Male, age 76, both hemispheres 27.1
2586 Male, age 75, left hemisphere 26.0
2666 Male, age 74, left hemisphere 24.1
Dorsal raphe nucleus
nTPM: 32.3
2047 Male, age 72, unknown 37.3
2298 Female, age 72, unknown 36.1
1828 Male, age 53, unknown 31.4
2750 Male, age 76, both hemispheres 29.4
2016 Female, age 72, unknown 27.5
Inferior colliculus
nTPM: 30.2
2097 Female, age 72, unknown 31.8
1890 Male, age 53, unknown 29.8
2849 Male, age 72, unknown 29.6
1848 Female, age 42, unknown 29.4
Median raphe nucleus
nTPM: 31.5
2220 Male, age 76, midline 31.5
Periaquaductal grey, anterior
nTPM: 33.5
1947 Male, age 18, unknown 34.5
1795 Male, age 51, unknown 33.8
2502 Female, age 75, unknown 32.2
Periaquaductal grey, dorsal
nTPM: 29.2
1840 Male, age 53, unknown 31.1
2850 Male, age 76, both hemispheres 30.4
1831 Male, age 72, unknown 29.2
2464 Female, age 72, unknown 26.2
Periaquaductal grey, lateral
nTPM: 30.5
2272 Male, age 74, both hemispheres 34.9
2140 Male, age 76, both hemispheres 29.1
2053 Male, age 18, unknown 27.6
Pretectal area
nTPM: 31.6
2273 Male, age 74, both hemispheres 38.1
2667 Female, age 75, unknown 37.7
2224 Female, age 72, unknown 34.0
2825 Male, age 18, unknown 33.6
1817 Female, age 42, unknown 30.9
2316 Male, age 76, right hemisphere 30.7
2007 Male, age 72, unknown 30.6
1816 Male, age 51, unknown 28.5
2407 Male, age 75, both hemispheres 28.5
1815 Male, age 53, unknown 27.7
1944 Female, age 72, unknown 26.8
Red nucleus
nTPM: 30.5
1821 Female, age 72, unknown 34.3
1904 Male, age 53, unknown 31.9
2588 Male, age 74, left hemisphere 31.3
2823 Male, age 76, right hemisphere 30.8
2725 Female, age 75, unknown 30.7
1954 Female, age 42, unknown 30.5
1865 Male, age 51, unknown 30.3
2769 Male, age 72, unknown 30.2
2785 Male, age 18, unknown 29.8
2227 Male, age 72, unknown 29.6
2584 Male, age 75, left hemisphere 28.6
2503 Female, age 72, unknown 28.1
Substantia nigra
nTPM: 29.4
2409 Female, age 72, unknown 40.7
1916 Female, age 42, unknown 31.6
1851 Male, age 51, unknown 31.0
1889 Female, age 72, unknown 29.7
1941 Male, age 53, unknown 29.7
2699 Male, age 18, unknown 27.8
2583 Male, age 75, right hemisphere 26.5
2665 Male, age 74, both hemispheres 26.0
2241 Male, age 72, unknown 25.6
2590 Female, age 75, unknown 25.4
Superior colliculus
nTPM: 30.1
2587 Male, age 74, left hemisphere 33.7
1895 Male, age 76, right hemisphere 32.1
2664 Male, age 75, both hemispheres 30.5
1839 Male, age 51, unknown 29.9
2261 Male, age 18, unknown 29.7
1995 Male, age 72, unknown 29.6
2668 Female, age 75, unknown 29.6
2087 Female, age 72, unknown 29.4
1796 Male, age 53, unknown 29.3
1913 Female, age 42, unknown 26.8
Ventral tegmental area
nTPM: 29.6
2021 Male, age 53, unknown 31.8
2223 Female, age 72, unknown 30.0
1942 Male, age 51, unknown 29.9
1915 Female, age 42, unknown 29.7
2218 Male, age 76, both hemispheres 28.8
2410 Female, age 72, unknown 27.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 25.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 25.5
Samples: 139

Max nTPM: 38.0
Min nTPM: 12.3
Std nTPM: 4.6
Median nTPM: 25.3
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 38.0
GTEX-1H3O1-0011-R2b-SM-CKZOT 60-69 years, male 36.5
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 36.5
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 36.1
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 35.6
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 35.4
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 35.1
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 33.7
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 33.4
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 33.0
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 32.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 36.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 36.9
FF:10158-103A5 76 years, female 36.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 17.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 15.2
Samples: 4

Max nTPM: 17.4
Min nTPM: 13.0
Sample A Female 14.2
Sample B Female 13.0
Sample C Male 17.4
Sample D Male 16.1
Midbrain
nTPM: 15.2
Samples: 4

Max nTPM: 17.3
Min nTPM: 13.9
Sample A Female 13.9
Sample B Female 14.3
Sample C Male 15.1
Sample D Male 17.3
Periaqueductal gray
nTPM: 17.3
Samples: 3

Max nTPM: 18.8
Min nTPM: 16.4
Sample B Female 16.4
Sample C Male 18.8
Sample D Male 16.8
Superior colliculi
nTPM: 14.1
Samples: 4

Max nTPM: 16.3
Min nTPM: 11.2
Sample A Female 14.8
Sample B Female 11.2
Sample C Male 14.1
Sample D Male 16.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 14.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 14.2
Samples: 4

Max nTPM: 15.1
Min nTPM: 13.8
Sample A Male 13.9
Sample B Male 14.0
Sample C Female 15.1
Sample D Female 13.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
70228089 Antisense, RP_050524_02_G05, Mouse strain C57BL/6J (56 days, male) 0.1

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