MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:61.2 nTPM
HPA Brain:118.1 nTPM
GTEx:61.2 nTPM
FANTOM5:200.9 Scaled Tags Per Million
Pig:98.7 nTPM
Mouse:59.2 nTPM
Allen mouse:6.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 118.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 118.1
2586 Male, age 75, left hemisphere 145.8
2666 Male, age 74, left hemisphere 128.3
1833 Male, age 53, unknown 122.1
2828 Female, age 72, unknown 120.8
2219 Male, age 76, both hemispheres 120.2
1830 Male, age 51, unknown 117.0
1827 Male, age 72, unknown 114.9
2019 Male, age 18, unknown 110.6
1870 Female, age 42, unknown 106.4
2411 Female, age 72, unknown 94.4
Dorsal raphe nucleus
nTPM: 101.4
2750 Male, age 76, both hemispheres 109.8
1828 Male, age 53, unknown 105.3
2016 Female, age 72, unknown 100.9
2047 Male, age 72, unknown 97.4
2298 Female, age 72, unknown 93.5
Inferior colliculus
nTPM: 105.3
2849 Male, age 72, unknown 133.1
1890 Male, age 53, unknown 101.9
1848 Female, age 42, unknown 100.4
2097 Female, age 72, unknown 85.7
Median raphe nucleus
nTPM: 112.8
2220 Male, age 76, midline 112.8
Periaquaductal grey, anterior
nTPM: 108.4
1795 Male, age 51, unknown 111.6
1947 Male, age 18, unknown 107.7
2502 Female, age 75, unknown 105.8
Periaquaductal grey, dorsal
nTPM: 110.2
2850 Male, age 76, both hemispheres 123.4
1831 Male, age 72, unknown 116.2
1840 Male, age 53, unknown 108.8
2464 Female, age 72, unknown 92.3
Periaquaductal grey, lateral
nTPM: 103.4
2053 Male, age 18, unknown 105.9
2272 Male, age 74, both hemispheres 103.6
2140 Male, age 76, both hemispheres 100.9
Pretectal area
nTPM: 114.5
2407 Male, age 75, both hemispheres 136.4
1817 Female, age 42, unknown 130.0
2667 Female, age 75, unknown 122.5
1816 Male, age 51, unknown 118.0
1815 Male, age 53, unknown 117.3
2007 Male, age 72, unknown 115.4
2825 Male, age 18, unknown 115.3
1944 Female, age 72, unknown 113.5
2316 Male, age 76, right hemisphere 99.7
2224 Female, age 72, unknown 99.1
2273 Male, age 74, both hemispheres 92.3
Red nucleus
nTPM: 113.8
2823 Male, age 76, right hemisphere 132.3
2584 Male, age 75, left hemisphere 132.0
2588 Male, age 74, left hemisphere 118.8
2769 Male, age 72, unknown 114.6
1865 Male, age 51, unknown 111.6
1821 Female, age 72, unknown 111.5
2725 Female, age 75, unknown 110.5
2785 Male, age 18, unknown 109.9
1904 Male, age 53, unknown 108.7
2227 Male, age 72, unknown 106.9
2503 Female, age 72, unknown 105.4
1954 Female, age 42, unknown 103.0
Substantia nigra
nTPM: 109.1
2665 Male, age 74, both hemispheres 132.0
2583 Male, age 75, right hemisphere 128.7
2699 Male, age 18, unknown 123.1
2590 Female, age 75, unknown 110.6
1851 Male, age 51, unknown 108.3
1889 Female, age 72, unknown 106.6
1941 Male, age 53, unknown 106.0
1916 Female, age 42, unknown 105.9
2409 Female, age 72, unknown 86.6
2241 Male, age 72, unknown 83.6
Superior colliculus
nTPM: 115.0
2664 Male, age 75, both hemispheres 145.2
1913 Female, age 42, unknown 123.9
1995 Male, age 72, unknown 119.7
2087 Female, age 72, unknown 112.5
1839 Male, age 51, unknown 111.7
2587 Male, age 74, left hemisphere 110.9
2668 Female, age 75, unknown 109.1
1796 Male, age 53, unknown 107.4
2261 Male, age 18, unknown 106.7
1895 Male, age 76, right hemisphere 102.5
Ventral tegmental area
nTPM: 103.2
2223 Female, age 72, unknown 109.7
2218 Male, age 76, both hemispheres 107.7
2021 Male, age 53, unknown 107.5
1942 Male, age 51, unknown 100.5
1915 Female, age 42, unknown 100.2
2410 Female, age 72, unknown 93.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 61.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 61.2
Samples: 139

Max nTPM: 95.7
Min nTPM: 38.4
Std nTPM: 11.5
Median nTPM: 58.5
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 95.7
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 93.3
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 92.5
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 84.9
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 84.3
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 84.3
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 83.0
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 81.6
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 81.2
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 81.0
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 79.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 200.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 200.9
FF:10158-103A5 76 years, female 200.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 98.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 93.9
Samples: 4

Max nTPM: 106.7
Min nTPM: 86.1
Sample A Female 86.1
Sample B Female 89.9
Sample C Male 92.9
Sample D Male 106.7
Midbrain
nTPM: 98.7
Samples: 4

Max nTPM: 131.4
Min nTPM: 84.6
Sample A Female 131.4
Sample B Female 84.6
Sample C Male 88.3
Sample D Male 90.6
Periaqueductal gray
nTPM: 91.7
Samples: 3

Max nTPM: 96.8
Min nTPM: 86.6
Sample B Female 86.6
Sample C Male 96.8
Sample D Male 91.6
Superior colliculi
nTPM: 95.7
Samples: 4

Max nTPM: 103.1
Min nTPM: 86.1
Sample A Female 96.2
Sample B Female 97.2
Sample C Male 86.1
Sample D Male 103.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 59.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 59.2
Samples: 4

Max nTPM: 62.3
Min nTPM: 56.7
Sample A Male 56.7
Sample B Male 58.6
Sample C Female 62.3
Sample D Female 59.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 6.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 6.2
68668024 Antisense, RP_050203_01_C07, Mouse strain C57BL/6J (56 days, male) 11.6
70813251 Antisense, RP_050712_03_E03, Mouse strain C57BL/6J (56 days, male) 0.8

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