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THAP11
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                                  BRAIN MEDULLA OBLONGATA Show tissue menu
                                  AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
                                  MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
                                  ANTIBODIES
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                                  VALIDATION
                                  Brain proteome
                                  Medulla oblongata
                                  MEDULLA OBLONGATA - Expression summary
                                  Protein expressioni

                                  On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

                                  Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

                                  If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

                                  No data
                                  RNA expressioni

                                  A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

                                  The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

                                  Scroll down to view mRNA expression data in more detail.
                                  HPA Brain:23.7 nTPM
                                  FANTOM5:15.0 Scaled Tags Per Million
                                  Pig:23.1 nTPM
                                  Allen mouse:0.3 Expression energy

                                  MEDULLA OBLONGATA - HPA Brain RNA-seq
                                  Max nTPM 23.7
                                  Sample id Sample description nTPM
                                  Area postrema
                                  nTPM: 20.0
                                  2306 Male, age 80, both hemispheres 22.5
                                  2799 Male, age 61, both hemispheres 21.3
                                  2054 Male, age 76, both hemispheres 16.2
                                  Dorsal medullary reticular nucleus
                                  nTPM: 19.0
                                  2373 Male, age 61, both hemispheres 19.6
                                  2040 Female, age 85, both hemispheres 19.1
                                  2088 Male, age 76, both hemispheres 18.2
                                  Dorsal motor vagal complex
                                  nTPM: 19.9
                                  2844 Male, age 55, unknown 23.9
                                  2185 Male, age 76, both hemispheres 22.2
                                  2797 Male, age 61, both hemispheres 21.9
                                  2133 Female, age 91, both hemispheres 20.7
                                  2000 Male, age 74, unknown 20.1
                                  2643 Male, age 74, both hemispheres 20.0
                                  2813 Female, age 72, unknown 16.1
                                  2807 Female, age 85, both hemispheres 14.5
                                  Gigantocellular reticular nuclei, medullary
                                  nTPM: 18.7
                                  2314 Male, age 61, both hemispheres 21.2
                                  2022 Male, age 76, right hemisphere 18.7
                                  2387 Female, age 91, both hemispheres 18.5
                                  2462 Male, age 74, both hemispheres 18.5
                                  1876 Female, age 85, both hemispheres 17.9
                                  2310 Male, age 80, both hemispheres 17.5
                                  Gigantocellular reticular nuclei, pars
                                  nTPM: 18.0
                                  2336 Male, age 61, both hemispheres 21.2
                                  2084 Female, age 85, both hemispheres 18.9
                                  2168 Male, age 76, both hemispheres 17.3
                                  2330 Male, age 80, both hemispheres 17.0
                                  2706 Male, age 80, both hemispheres 15.8
                                  Inferior olive
                                  nTPM: 22.6
                                  2563 Male, age 74, both hemispheres 25.5
                                  2085 Female, age 85, both hemispheres 24.7
                                  2178 Male, age 61, both hemispheres 22.4
                                  2628 Female, age 91, both hemispheres 20.2
                                  2379 Male, age 80, both hemispheres 20.1
                                  Lateral medullary reticular nucleus
                                  nTPM: 19.7
                                  2852 Male, age 80, both hemispheres 21.9
                                  2305 Male, age 74, both hemispheres 21.8
                                  2190 Female, age 85, both hemispheres 19.9
                                  2804 Female, age 91, both hemispheres 19.5
                                  2044 Male, age 76, both hemispheres 17.9
                                  2374 Male, age 61, both hemispheres 17.4
                                  Medial olivary nucleus
                                  nTPM: 19.9
                                  2138 Female, age 91, both hemispheres 22.2
                                  1943 Male, age 61, both hemispheres 21.1
                                  1962 Male, age 76, both hemispheres 18.6
                                  2851 Male, age 80, both hemispheres 17.8
                                  Medial vestibular nucleus
                                  nTPM: 18.2
                                  2093 Male, age 80, both hemispheres 19.7
                                  2743 Female, age 85, both hemispheres 18.9
                                  2624 Male, age 61, both hemispheres 18.3
                                  2801 Male, age 74, both hemispheres 18.3
                                  2803 Female, age 91, both hemispheres 17.2
                                  2134 Male, age 76, both hemispheres 16.7
                                  Motor hypoglossal nucleus
                                  nTPM: 18.4
                                  2182 Male, age 80, both hemispheres 21.4
                                  2125 Female, age 91, both hemispheres 21.0
                                  2132 Female, age 85, both hemispheres 19.0
                                  2277 Male, age 76, both hemispheres 18.3
                                  2461 Male, age 61, both hemispheres 12.5
                                  Nucleus ambiguus
                                  nTPM: 23.7
                                  2096 Female, age 85, both hemispheres 25.7
                                  2071 Male, age 76, both hemispheres 21.7
                                  Nucleus cuneatus
                                  nTPM: 19.4
                                  2564 Male, age 74, both hemispheres 24.1
                                  2562 Male, age 61, both hemispheres 22.5
                                  2131 Male, age 76, both hemispheres 21.5
                                  2100 Male, age 76, both hemispheres 21.3
                                  2376 Male, age 61, both hemispheres 19.9
                                  2380 Male, age 80, both hemispheres 17.7
                                  2381 Male, age 80, both hemispheres 17.0
                                  2805 Female, age 91, both hemispheres 15.8
                                  2808 Female, age 85, both hemispheres 14.7
                                  Nucleus gracilis
                                  nTPM: 20.7
                                  2627 Male, age 74, both hemispheres 23.9
                                  2382 Male, age 80, both hemispheres 19.8
                                  2299 Female, age 85, both hemispheres 18.5
                                  Nucleus raphe obscurus
                                  nTPM: 18.7
                                  2142 Male, age 76, midline 19.3
                                  2845 Female, age 85, midline 19.2
                                  2800 Male, age 61, midline 17.5
                                  Nucleus raphe pallidus
                                  nTPM: 20.4
                                  2145 Male, age 76, midline 21.0
                                  1924 Male, age 61, midline 20.6
                                  2183 Male, age 80, midline 19.6
                                  Nucleus tractus solitarii
                                  nTPM: 17.3
                                  2656 Male, age 76, both hemispheres 18.1
                                  2191 Female, age 85, both hemispheres 17.9
                                  2307 Male, age 80, both hemispheres 16.9
                                  2144 Female, age 91, right hemisphere 16.5
                                  Parvicellular reticular nuclei
                                  nTPM: 18.1
                                  2119 Male, age 80, both hemispheres 18.7
                                  2558 Male, age 74, both hemispheres 18.0
                                  2095 Male, age 76, both hemispheres 17.4
                                  Parvicellular reticular nuclei, medullary
                                  nTPM: 19.8
                                  2091 Female, age 85, both hemispheres 20.0
                                  2189 Female, age 91, both hemispheres 19.9
                                  2181 Male, age 80, left hemisphere 19.5
                                  Peritrigeminal nucleus
                                  nTPM: 20.1
                                  2067 Female, age 85, both hemispheres 21.6
                                  2179 Male, age 61, both hemispheres 19.5
                                  2136 Male, age 76, both hemispheres 19.1
                                  Prepositus hypoglossal nucleus
                                  nTPM: 18.7
                                  2086 Male, age 80, both hemispheres 20.4
                                  2855 Female, age 85, right hemisphere 16.9
                                  Spinal trigeminal nucleus, caudal
                                  nTPM: 19.4
                                  2447 Male, age 76, both hemispheres 22.2
                                  2308 Male, age 80, both hemispheres 19.8
                                  2312 Male, age 61, both hemispheres 19.8
                                  2390 Female, age 91, both hemispheres 18.1
                                  2642 Male, age 74, both hemispheres 17.0
                                  Spinal trigeminal nucleus, interpolar
                                  nTPM: 17.7
                                  2033 Male, age 80, both hemispheres 18.9
                                  2386 Female, age 85, both hemispheres 18.2
                                  2625 Male, age 61, both hemispheres 17.7
                                  2389 Female, age 91, both hemispheres 17.4
                                  2066 Male, age 76, right hemisphere 16.5
                                  Spinal vestibular nucleus
                                  nTPM: 19.0
                                  2748 Male, age 76, both hemispheres 20.7
                                  2780 Male, age 80, both hemispheres 20.2
                                  2186 Female, age 91, both hemispheres 19.8
                                  2384 Male, age 74, both hemispheres 18.3
                                  2796 Male, age 61, both hemispheres 17.6
                                  2806 Female, age 85, both hemispheres 17.5
                                  Superior vestibular nucleus
                                  nTPM: 19.1
                                  2015 Male, age 80, both hemispheres 20.7
                                  2061 Male, age 76, both hemispheres 19.1
                                  2383 Male, age 74, both hemispheres 17.5
                                  Ventral medullary reticular nucleus
                                  nTPM: 18.9
                                  2372 Male, age 61, both hemispheres 19.5
                                  2060 Male, age 76, both hemispheres 18.4
                                  Ventrolateral medulla, A1-C1 cell groups
                                  nTPM: 19.9
                                  2180 Male, age 61, both hemispheres 20.5
                                  2118 Male, age 80, both hemispheres 20.4
                                  2302 Female, age 91, both hemispheres 19.6
                                  1986 Male, age 76, both hemispheres 19.5
                                  2741 Female, age 85, both hemispheres 19.4

                                  MEDULLA OBLONGATA - FANTOM5 CAGEi

                                  RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

                                  Max Scaled Tags Per Million 15.0
                                  FANTOM5 sample id Sample description Scaled Tags Per Million
                                  Medulla oblongata
                                  Scaled Tags Per Million: 15.0
                                  FF:10038-101F2 18-64 years, mixed 17.4
                                  FF:10155-103A2 76 years, female 14.8
                                  FF:10174-103C3 60 years, female 12.9

                                  MEDULLA OBLONGATA - Pig RNA-seqi

                                  RNA-seq data obtained from pig brain is reported as nTPM .

                                  Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
                                  Average nTPM 23.1
                                  Pig sample Sample description nTPM
                                  22.023.024.121.525.0024681012141618202224
                                  22.023.024.121.525.0024681012141618202224
                                  Medulla oblongata
                                  nTPM: 23.1
                                  Samples: 4

                                  Max nTPM: 25.0
                                  Min nTPM: 21.5
                                  Sample A Female 22.2
                                  Sample B Female 21.5
                                  Sample C Male 25.0
                                  Sample D Male 23.8

                                  MEDULLA OBLONGATA - Allen Mouse ISHi

                                  In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

                                  Max Expression energy 0.3
                                  Allen experiment id Experiment description Expression energy
                                  Medulla oblongata
                                  Expression energy: 0.3
                                  69014800 Antisense, RP_050310_01_G04, Mouse strain C57BL/6J (56 days, male) 0.3

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